Variant report

Variant	rs142913803
Chromosome Location	chr6:119555551-119555552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119548685..119550916-chr6:119553929..119555935,3	K562	blood:
2	chr6:119525280..119527680-chr6:119553192..119555553,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv522725	chr6:119549468-119565043	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv969440	chr6:119554594-119559045	Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119525400-119556000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
5	chr6:119525800-119555800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
7	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:119531600-119558400	Weak transcription	NHLF	lung
9	chr6:119537400-119556800	Weak transcription	Fetal Stomach	stomach
10	chr6:119537600-119558400	Weak transcription	Right Atrium	heart
11	chr6:119537800-119555600	Weak transcription	Left Ventricle	heart
12	chr6:119537800-119558400	Weak transcription	Ovary	ovary
13	chr6:119541000-119558400	Weak transcription	NHEK	skin
14	chr6:119545400-119556000	Weak transcription	Fetal Thymus	thymus
15	chr6:119545600-119556000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:119545600-119558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:119546000-119556000	Weak transcription	Fetal Lung	lung
18	chr6:119547200-119556200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:119547200-119558400	Weak transcription	Spleen	Spleen
20	chr6:119547400-119583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:119547600-119556000	Weak transcription	NHDF-Ad	bronchial
22	chr6:119547600-119558400	Weak transcription	Esophagus	oesophagus
23	chr6:119547600-119558400	Weak transcription	Pancreas	Pancrea
24	chr6:119547600-119558400	Weak transcription	Thymus	Thymus
25	chr6:119548800-119558400	Weak transcription	Primary T cells from cord blood	blood
26	chr6:119549000-119555600	Weak transcription	Aorta	Aorta
27	chr6:119549200-119556000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:119549800-119558400	Weak transcription	Lung	lung
29	chr6:119550000-119558400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:119550000-119561600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:119550800-119558400	Weak transcription	Right Ventricle	heart
32	chr6:119551200-119556600	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:119551200-119558400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:119551400-119556000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:119551400-119558400	Weak transcription	Dnd41	blood
36	chr6:119552200-119556000	Weak transcription	Adipose Nuclei	Adipose
37	chr6:119552200-119558400	Weak transcription	HUVEC	blood vessel
38	chr6:119552400-119555600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:119552400-119556000	Weak transcription	Primary B cells from cord blood	blood
40	chr6:119552400-119558400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:119552800-119555800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:119552800-119555800	Weak transcription	K562	blood
43	chr6:119553000-119555600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:119553000-119556400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:119553000-119558400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:119553200-119555600	Weak transcription	HepG2	liver
47	chr6:119553200-119556000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:119553400-119555600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:119554400-119558400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:119554400-119558400	Weak transcription	Fetal Kidney	kidney

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