Variant report
| Variant | rs142938217 |
|---|---|
| Chromosome Location | chr5:79655974-79655975 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr5:79655666-79656125 | GM12892 | blood: | n/a | n/a |
| 2 | POLR2A | chr5:79655719-79656030 | GM12878 | blood: | n/a | n/a |
| 3 | HEY1 | chr5:79655790-79655980 | HepG2 | liver: | n/a | n/a |
| 4 | HEY1 | chr5:79655715-79656029 | K562 | blood: | n/a | n/a |
| 5 | POLR2A | chr5:79655740-79656026 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| HNRNPA1P12 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | esv3470535 | chr5:79652549-79659514 | Enhancers | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3470536 | chr5:79652549-79659514 | Enhancers | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3367208 | chr5:79652593-79659443 | Enhancers | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv20746 | chr5:79652813-79659000 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv980691 | chr5:79654034-79656527 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
