Variant report

Variant	rs142964864
Chromosome Location	chr7:150439449-150439450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GIMAP5-1	chr7:150439271-150439470	NONHSAT124150

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv824391	chr7:150439293-150439864	Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
11	nsv824392	chr7:150439361-150439864	Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
12	nsv824393	chr7:150439417-150439864	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150434600-150440600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr7:150435400-150442800	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
3	chr7:150435600-150442400	Weak transcription	Ovary	ovary
4	chr7:150435800-150439600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:150435800-150441000	Weak transcription	Pancreas	Pancrea
6	chr7:150435800-150441200	Weak transcription	Gastric	stomach
7	chr7:150435800-150441800	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
8	chr7:150436000-150441800	Weak transcription	Fetal Intestine Small	intestine
9	chr7:150436200-150439600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:150436200-150450200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:150436400-150439600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:150436400-150443400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
13	chr7:150436800-150442200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
14	chr7:150436800-150451400	Weak transcription	Brain Substantia Nigra	brain
15	chr7:150437000-150439800	Weak transcription	Fetal Heart	heart
16	chr7:150437000-150441600	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:150437000-150450000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:150437200-150441400	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
19	chr7:150437200-150441600	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr7:150437200-150441600	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:150437200-150442400	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:150437200-150442400	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
23	chr7:150437200-150442600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:150437200-150443200	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
25	chr7:150437400-150439600	Strong transcription	Fetal Thymus	thymus
26	chr7:150437400-150441400	Weak transcription	Colonic Mucosa	Colon
27	chr7:150437400-150441800	Weak transcription	Thymus	Thymus
28	chr7:150437400-150443000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
29	chr7:150437400-150443200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
30	chr7:150437600-150439600	Weak transcription	Esophagus	oesophagus
31	chr7:150437600-150439800	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:150437600-150443200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:150437600-150443800	Weak transcription	Small Intestine	intestine
34	chr7:150437800-150439600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr7:150437800-150439600	Weak transcription	Liver	Liver
36	chr7:150437800-150439600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr7:150437800-150439800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:150438000-150439800	Weak transcription	Psoas Muscle	Psoas
39	chr7:150438000-150440400	Strong transcription	Placenta	Placenta
40	chr7:150438000-150440800	Genic enhancers	Left Ventricle	heart
41	chr7:150438000-150441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:150438000-150441800	Genic enhancers	Adipose Nuclei	Adipose
43	chr7:150438000-150442400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr7:150438200-150439600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:150438600-150440600	Genic enhancers	Right Ventricle	heart
46	chr7:150438600-150441200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr7:150438600-150442800	Genic enhancers	Spleen	Spleen
48	chr7:150438800-150440600	Strong transcription	Fetal Muscle Leg	muscle
49	chr7:150438800-150441600	Enhancers	Right Atrium	heart
50	chr7:150439000-150439600	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links