Variant report

Variant	rs142978132
Chromosome Location	chr16:81526426-81526427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:81525969-81526619	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr16:81525920-81526440	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr16:81525164-81526596	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr16:81526005-81526489	HUVEC	blood vessel:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81510328..81512312-chr16:81524530..81527083,3	MCF-7	breast:
2	chr16:81525291..81527672-chr16:81527844..81530075,2	MCF-7	breast:
3	chr16:81517573..81519911-chr16:81525610..81528257,2	MCF-7	breast:
4	chr16:81520528..81523163-chr16:81525818..81527534,2	MCF-7	breast:
5	chr16:81516881..81521971-chr16:81523389..81527475,7	MCF-7	breast:

No data

Variant related genes	Relation type
CMIP	TF binding region
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv907010	chr16:81488893-81534790	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv457576	chr16:81525637-81579433	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv573360	chr16:81525637-81579433	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81506000-81546600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:81506600-81547000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:81510400-81533200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr16:81511400-81527000	Enhancers	Fetal Muscle Leg	muscle
5	chr16:81515200-81531600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr16:81515200-81532600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr16:81517400-81526600	Weak transcription	Hela-S3	cervix
8	chr16:81517400-81531600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr16:81517600-81526800	Genic enhancers	A549	lung
10	chr16:81518200-81527000	Weak transcription	Thymus	Thymus
11	chr16:81519600-81532000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr16:81519800-81527200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr16:81520400-81532200	Enhancers	Spleen	Spleen
14	chr16:81520600-81526800	Weak transcription	Dnd41	blood
15	chr16:81520800-81527400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr16:81521000-81528600	Weak transcription	Primary T cells from cord blood	blood
17	chr16:81522200-81528800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr16:81522400-81526600	Weak transcription	NHEK	skin
19	chr16:81522400-81528400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr16:81522400-81537000	Enhancers	HUVEC	blood vessel
21	chr16:81522600-81528400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr16:81522600-81528800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr16:81522600-81529800	Enhancers	Esophagus	oesophagus
24	chr16:81522600-81532200	Enhancers	Fetal Muscle Trunk	muscle
25	chr16:81522800-81529800	Enhancers	Placenta	Placenta
26	chr16:81523200-81526800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr16:81523400-81526800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr16:81523600-81527600	Enhancers	Fetal Brain Male	brain
29	chr16:81523600-81531800	Enhancers	Stomach Mucosa	stomach
30	chr16:81523800-81528200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr16:81523800-81529000	Weak transcription	Ovary	ovary
32	chr16:81523800-81530800	Weak transcription	Colon Smooth Muscle	Colon
33	chr16:81524000-81526800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr16:81524000-81531000	Weak transcription	GM12878-XiMat	blood
35	chr16:81524200-81529800	Enhancers	Gastric	stomach
36	chr16:81524400-81528000	Enhancers	Fetal Lung	lung
37	chr16:81524400-81530600	Enhancers	Right Atrium	heart
38	chr16:81524400-81531200	Enhancers	Duodenum Mucosa	Duodenum
39	chr16:81524400-81533800	Enhancers	Liver	Liver
40	chr16:81524600-81527000	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr16:81524600-81527400	Weak transcription	Primary B cells from cord blood	blood
42	chr16:81524600-81527800	Enhancers	Brain Substantia Nigra	brain
43	chr16:81524600-81532200	Enhancers	Pancreas	Pancrea
44	chr16:81524800-81526800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr16:81524800-81526800	Enhancers	Brain Angular Gyrus	brain
46	chr16:81524800-81527800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr16:81524800-81528000	Enhancers	H1 Cell Line	embryonic stem cell
48	chr16:81524800-81528000	Enhancers	Brain Cingulate Gyrus	brain
49	chr16:81524800-81532200	Genic enhancers	Fetal Intestine Small	intestine
50	chr16:81525000-81527600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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