Variant report

Variant	rs143019456
Chromosome Location	chr1:95028497-95028498
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95027000-95029000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:95028000-95028800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:95028000-95028800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:95028000-95029000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:95028000-95029000	Enhancers	Stomach Mucosa	stomach
6	chr1:95028000-95029000	Enhancers	HSMMtube	muscle
7	chr1:95028000-95029200	Enhancers	Fetal Intestine Large	intestine
8	chr1:95028200-95028600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:95028200-95028600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:95028200-95028600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr1:95028200-95028800	Enhancers	Pancreas	Pancrea
12	chr1:95028200-95028800	Flanking Active TSS	HepG2	liver
13	chr1:95028200-95029000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:95028200-95029000	Enhancers	Colonic Mucosa	Colon
15	chr1:95028200-95029000	Enhancers	Duodenum Mucosa	Duodenum
16	chr1:95028200-95029000	Enhancers	Fetal Intestine Small	intestine
17	chr1:95028200-95029000	Enhancers	Placenta	Placenta
18	chr1:95028200-95029000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:95028200-95029200	Enhancers	Hela-S3	cervix
20	chr1:95028400-95028600	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr1:95028400-95028800	Enhancers	Esophagus	oesophagus
22	chr1:95028400-95028800	Flanking Active TSS	A549	lung
23	chr1:95028400-95031400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links