Variant report

Variant	rs143047442
Chromosome Location	chr2:100936550-100936551
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2753837	chr2:100928086-100955814	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3323401	chr2:100935920-100940518	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100901000-100937000	Weak transcription	Fetal Brain Male	brain
2	chr2:100918200-100937600	Weak transcription	Aorta	Aorta
3	chr2:100924200-100936800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:100929800-100937000	Weak transcription	Pancreas	Pancrea
5	chr2:100930800-100937000	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:100935200-100937000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:100935200-100937000	Weak transcription	Ovary	ovary
8	chr2:100935200-100937000	Weak transcription	K562	blood
9	chr2:100935600-100936600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:100935800-100937000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr2:100935800-100937400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:100935800-100939400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr2:100936000-100936800	Active TSS	Brain Anterior Caudate	brain
14	chr2:100936000-100938800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:100936000-100939400	Active TSS	A549	lung
16	chr2:100936200-100937000	Active TSS	Brain Angular Gyrus	brain
17	chr2:100936400-100936600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:100936400-100936600	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr2:100936400-100937800	Flanking Active TSS	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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