Variant report

Variant	rs143073294
Chromosome Location	chr14:64700553-64700554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64690892..64693639-chr14:64700268..64702860,3	MCF-7	breast:
2	chr14:64694405..64698467-chr14:64698699..64701055,4	MCF-7	breast:
3	chr14:64681860..64684849-chr14:64698718..64700886,3	MCF-7	breast:
4	chr14:64699270..64701391-chr14:64702522..64704154,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1050378	chr14:64686543-64703012	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv524908	chr14:64700045-64703593	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64674800-64700600	Strong transcription	Fetal Intestine Large	intestine
2	chr14:64688800-64710600	Weak transcription	Fetal Heart	heart
3	chr14:64689200-64705400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:64690200-64711200	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:64691600-64700800	Weak transcription	Brain Anterior Caudate	brain
6	chr14:64691600-64701000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:64691800-64701400	Weak transcription	NHEK	skin
8	chr14:64692200-64701000	Weak transcription	Brain Angular Gyrus	brain
9	chr14:64692400-64700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:64692400-64701200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:64694600-64701000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:64695800-64705800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr14:64696000-64700800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:64696000-64700800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:64696000-64701000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:64696000-64701200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:64696000-64701600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:64696000-64701800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:64696000-64701800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:64696000-64702800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:64696000-64703400	Weak transcription	Gastric	stomach
22	chr14:64696000-64705600	Weak transcription	Fetal Lung	lung
23	chr14:64696000-64705800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr14:64696200-64700600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:64696200-64701000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:64696200-64702800	Weak transcription	Fetal Kidney	kidney
27	chr14:64696200-64706000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:64696400-64701000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:64696400-64703000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr14:64696400-64708200	Weak transcription	Aorta	Aorta
31	chr14:64697200-64702800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:64697600-64700800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:64698200-64700600	Strong transcription	Adipose Nuclei	Adipose
34	chr14:64698200-64700800	Enhancers	HUVEC	blood vessel
35	chr14:64698200-64701600	Weak transcription	Colonic Mucosa	Colon
36	chr14:64698400-64700600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:64698400-64705600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:64698600-64700600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:64698600-64702600	Strong transcription	Fetal Stomach	stomach
40	chr14:64698800-64700600	Strong transcription	Fetal Brain Female	brain
41	chr14:64698800-64700600	Enhancers	NH-A	brain
42	chr14:64698800-64701000	Enhancers	HSMMtube	muscle
43	chr14:64698800-64702400	Enhancers	Primary B cells from peripheral blood	blood
44	chr14:64698800-64702600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:64698800-64703600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:64698800-64703600	Flanking Active TSS	GM12878-XiMat	blood
47	chr14:64698800-64716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:64699000-64700600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr14:64699000-64701000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr14:64699200-64700800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links