The 2.0 version of rSNPBase

Variant report

Variant rs143079519
Chromosome Location chr15:41978417-41978418
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:41954400-41978600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr15:41954400-41982800 Weak transcription Small Intestine intestine
3 chr15:41954600-41983800 Weak transcription Thymus Thymus
4 chr15:41954600-42001000 Weak transcription Colonic Mucosa Colon
5 chr15:41954800-41980800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr15:41955000-41988200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr15:41959400-41988600 Weak transcription Muscle Satellite Cultured Cells --
8 chr15:41959400-41989000 Weak transcription NHDF-Ad bronchial
9 chr15:41959600-41981000 Weak transcription Osteobl bone
10 chr15:41961800-41990600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr15:41962000-41980200 Weak transcription Duodenum Mucosa Duodenum
12 chr15:41962000-41983800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr15:41962000-41988400 Weak transcription Adipose Nuclei Adipose
14 chr15:41962000-41990800 Weak transcription NH-A brain
15 chr15:41962000-41991200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr15:41962000-42001400 Weak transcription Gastric stomach
17 chr15:41962200-41984400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr15:41962200-42001000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr15:41962600-41981400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr15:41962600-41981800 Weak transcription Primary hematopoietic stem cells blood
21 chr15:41962600-41983400 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr15:41962600-41983600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr15:41962600-41984000 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr15:41962600-41988400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr15:41963400-41988400 Weak transcription Placenta Placenta
26 chr15:41963600-41987800 Weak transcription Primary B cells from cord blood blood
27 chr15:41964600-41981000 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr15:41964600-41982200 Weak transcription Ovary ovary
29 chr15:41964800-41983800 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr15:41965000-41980600 Weak transcription K562 blood
31 chr15:41965000-41982400 Weak transcription Brain Anterior Caudate brain
32 chr15:41966600-41984400 Weak transcription Left Ventricle heart
33 chr15:41966600-41988400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr15:41967600-41982600 Weak transcription GM12878-XiMat blood
35 chr15:41967800-41980600 Weak transcription Dnd41 blood
36 chr15:41968400-41982200 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr15:41968800-41988600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr15:41971200-41980600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr15:41971200-41980800 Weak transcription Colon Smooth Muscle Colon
40 chr15:41971600-41980400 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr15:41971600-41980400 Weak transcription Fetal Stomach stomach
42 chr15:41971600-41983600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr15:41971600-41988200 Weak transcription Fetal Thymus thymus
44 chr15:41971600-41997400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr15:41972000-41980800 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr15:41972000-41989600 Weak transcription Fetal Intestine Small intestine
47 chr15:41972400-42065200 Weak transcription ES-WA7 Cell Line embryonic stem cell
48 chr15:41972800-41999600 Weak transcription Fetal Brain Female brain
49 chr15:41973200-41981000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
50 chr15:41973200-41988400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015