Variant report

Variant	rs143079919
Chromosome Location	chr9:94821408-94821409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94821053..94823320-chr9:94823986..94826593,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv831653	chr9:94692454-94867542	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv982320	chr9:94799706-94821700	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3324084	chr9:94821393-94830399	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94805000-94823200	Strong transcription	Duodenum Mucosa	Duodenum
2	chr9:94805400-94821600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:94805600-94822600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:94805600-94823400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:94805800-94822800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:94806000-94823200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr9:94806800-94822000	Weak transcription	Stomach Mucosa	stomach
8	chr9:94806800-94822400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:94806800-94822800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr9:94807200-94822000	Weak transcription	Psoas Muscle	Psoas
11	chr9:94807200-94822600	Strong transcription	Primary T cells from cord blood	blood
12	chr9:94807200-94823000	Strong transcription	Primary B cells from cord blood	blood
13	chr9:94807200-94823200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr9:94807400-94822800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:94807600-94824600	Weak transcription	Fetal Brain Male	brain
16	chr9:94809600-94823600	Weak transcription	Colonic Mucosa	Colon
17	chr9:94810800-94860200	Weak transcription	Right Ventricle	heart
18	chr9:94811200-94822600	Strong transcription	Primary hematopoietic stem cells	blood
19	chr9:94811800-94828400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:94812200-94822400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr9:94812200-94832200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:94812400-94828400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:94814800-94822000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:94815400-94822200	Strong transcription	Fetal Muscle Leg	muscle
25	chr9:94815400-94822600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:94815400-94822600	Strong transcription	Placenta	Placenta
27	chr9:94815400-94823000	Strong transcription	Dnd41	blood
28	chr9:94815600-94822200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr9:94815600-94822800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr9:94815800-94822600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:94816000-94823400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:94816600-94822200	Strong transcription	K562	blood
33	chr9:94816600-94822600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr9:94816600-94822600	Strong transcription	Fetal Thymus	thymus
35	chr9:94817000-94822600	Strong transcription	Left Ventricle	heart
36	chr9:94817200-94824800	Weak transcription	Brain Substantia Nigra	brain
37	chr9:94817400-94826200	Weak transcription	NHLF	lung
38	chr9:94817600-94822000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:94817600-94822200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:94817600-94822200	Weak transcription	Fetal Stomach	stomach
41	chr9:94817600-94823400	Weak transcription	Brain Anterior Caudate	brain
42	chr9:94817600-94827000	Weak transcription	Small Intestine	intestine
43	chr9:94817600-94828000	Weak transcription	Gastric	stomach
44	chr9:94817600-94828000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr9:94817600-94828200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:94817600-94828400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:94817600-94828600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:94817800-94822000	Weak transcription	Spleen	Spleen
49	chr9:94817800-94822800	Weak transcription	Fetal Brain Female	brain
50	chr9:94817800-94823200	Weak transcription	Colon Smooth Muscle	Colon

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