Variant report

Variant	rs143116435
Chromosome Location	chr10:3985295-3985296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3824577..3826602-chr10:3984998..3987938,2	K562	blood:
2	chr10:3817038..3819600-chr10:3984644..3988017,3	K562	blood:
3	chr10:3827330..3829865-chr10:3983711..3986430,2	MCF-7	breast:
4	chr10:3827011..3830309-chr10:3983970..3986925,3	K562	blood:
5	chr10:3984535..3987512-chr10:3990642..3992175,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PFKP-16	chr10:3985205-3985406	XLOC_008357

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3957400-3985400	Weak transcription	Right Ventricle	heart
2	chr10:3977400-3988400	Weak transcription	Left Ventricle	heart
3	chr10:3977800-3986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:3978200-3985800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:3978200-3987800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:3978600-3988000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:3979000-3987800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:3979000-3988000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:3979000-3994400	Weak transcription	Stomach Mucosa	stomach
10	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:3983600-3987200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:3983800-3986200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:3983800-3986200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:3984000-3987800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:3984200-3990000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:3984400-3985400	Enhancers	Dnd41	blood
17	chr10:3984400-3985400	Enhancers	HMEC	breast
18	chr10:3984400-3985400	Enhancers	NHDF-Ad	bronchial
19	chr10:3984400-3985600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:3984400-3985600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:3984400-3985600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:3984400-3985600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:3984400-3985600	Enhancers	K562	blood
24	chr10:3984400-3985600	Enhancers	Osteobl	bone
25	chr10:3984400-3986000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:3984400-3986200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:3984400-3986400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:3984600-3985400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:3984600-3985600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:3984600-3985600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:3984600-3985600	Enhancers	HUVEC	blood vessel
32	chr10:3984600-3985600	Enhancers	NHLF	lung
33	chr10:3984600-3985800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:3984600-3986000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:3984600-3986000	Flanking Active TSS	NHEK	skin
36	chr10:3984800-3985600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:3984800-3987400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:3985000-3986000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:3985000-3990800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:3985000-3994200	Weak transcription	Gastric	stomach
41	chr10:3985200-3985400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:3985200-3985400	Enhancers	Esophagus	oesophagus
43	chr10:3985200-3985400	Flanking Active TSS	NH-A	brain
44	chr10:3985200-3985600	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr10:3985200-3986000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:3985200-3988000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links