Variant report

Variant	rs143169376
Chromosome Location	chr7:105459889-105459890
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:105459853-105460047	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:105459844-105460127	GM12892	blood:	n/a	n/a
3	POLR2A	chr7:105459849-105460127	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000226624	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv970568	chr7:105459121-105460967	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105446400-105471200	Weak transcription	Lung	lung
3	chr7:105446800-105470000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:105446800-105470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:105446800-105471200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:105447000-105470000	Weak transcription	Ovary	ovary
7	chr7:105447200-105470200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:105447600-105470000	Weak transcription	NH-A	brain
9	chr7:105447800-105470600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:105448000-105460000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:105448200-105460800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:105448600-105465000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:105448800-105463200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:105448800-105470400	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
16	chr7:105450200-105466400	Weak transcription	NHLF	lung
17	chr7:105450400-105460000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:105450400-105470200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:105450800-105463200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:105450800-105470200	Weak transcription	NHEK	skin
21	chr7:105451200-105462600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr7:105451600-105462000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:105452400-105464600	Weak transcription	Fetal Intestine Large	intestine
24	chr7:105452400-105467400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:105452400-105471200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:105452600-105460000	Weak transcription	Fetal Stomach	stomach
27	chr7:105452600-105470800	Weak transcription	Small Intestine	intestine
28	chr7:105452600-105471200	Weak transcription	Right Ventricle	heart
29	chr7:105452800-105465800	Weak transcription	Liver	Liver
30	chr7:105452800-105470400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:105456200-105470200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:105456600-105467400	Weak transcription	HUVEC	blood vessel
33	chr7:105456600-105470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:105456800-105462200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:105456800-105462400	Weak transcription	Fetal Kidney	kidney
36	chr7:105456800-105467200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:105457000-105460600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:105457000-105460600	Enhancers	Placenta	Placenta
39	chr7:105457200-105460600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:105457200-105463800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:105457200-105478000	Weak transcription	Brain Anterior Caudate	brain
42	chr7:105457400-105460600	Weak transcription	Gastric	stomach
43	chr7:105457400-105461200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:105457400-105461200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:105457400-105462400	Weak transcription	Right Atrium	heart
46	chr7:105457400-105468600	Weak transcription	Spleen	Spleen
47	chr7:105457400-105469800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr7:105457400-105470000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:105457600-105460000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:105457600-105465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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