Variant report

Variant	rs143178521
Chromosome Location	chr15:77500003-77500004
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv974604	chr15:77496873-77500234	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77471400-77505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:77472400-77500800	Weak transcription	HSMMtube	muscle
3	chr15:77473600-77527800	Weak transcription	Placenta	Placenta
4	chr15:77480400-77528000	Weak transcription	Fetal Stomach	stomach
5	chr15:77482000-77506200	Weak transcription	Pancreas	Pancrea
6	chr15:77482200-77504800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:77482200-77528000	Weak transcription	Spleen	Spleen
8	chr15:77484000-77518800	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:77487400-77516800	Weak transcription	Fetal Heart	heart
10	chr15:77491800-77510600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:77492000-77500800	Weak transcription	HUVEC	blood vessel
12	chr15:77492000-77505600	Weak transcription	Fetal Intestine Large	intestine
13	chr15:77492000-77516600	Weak transcription	NH-A	brain
14	chr15:77492000-77517000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:77492200-77505800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:77492200-77507000	Weak transcription	Left Ventricle	heart
17	chr15:77492200-77509400	Weak transcription	Ovary	ovary
18	chr15:77492200-77515000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:77492200-77516600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:77492200-77516800	Weak transcription	Adipose Nuclei	Adipose
21	chr15:77492200-77516800	Weak transcription	NHLF	lung
22	chr15:77492200-77527400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:77492200-77527800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:77492200-77527800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:77492200-77528200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:77492400-77500200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:77492400-77500200	Weak transcription	HSMM	muscle
28	chr15:77492400-77500400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:77492400-77501000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:77492400-77506000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:77492400-77516600	Weak transcription	Fetal Intestine Small	intestine
32	chr15:77492400-77516800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:77492400-77516800	Weak transcription	Primary B cells from cord blood	blood
34	chr15:77492400-77544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:77492600-77501400	Weak transcription	Primary T cells from cord blood	blood
36	chr15:77492600-77516600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:77492600-77516800	Weak transcription	Aorta	Aorta
38	chr15:77492800-77516400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:77494600-77501000	Weak transcription	Brain Angular Gyrus	brain
40	chr15:77494600-77516600	Weak transcription	Brain Substantia Nigra	brain
41	chr15:77494800-77514200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:77494800-77518800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:77497000-77501800	Weak transcription	Fetal Brain Male	brain
44	chr15:77499600-77500400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:77499600-77500400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
46	chr15:77499600-77500400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:77499600-77500600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:77499600-77500800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:77499600-77500800	ZNF genes & repeats	Fetal Muscle Leg	muscle
50	chr15:77499600-77500800	ZNF genes & repeats	NHDF-Ad	bronchial

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