Variant report

Variant	rs143178911
Chromosome Location	chr2:209007613-209007614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875747	chr2:208990345-209042963	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv875748	chr2:208994399-209033557	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv834517	chr2:209006797-209170269	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209004400-209012800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:209006600-209007800	Enhancers	HMEC	breast
3	chr2:209006600-209008200	Enhancers	Brain Germinal Matrix	brain
4	chr2:209006800-209007800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr2:209006800-209007800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:209006800-209007800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:209006800-209008000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:209006800-209008000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:209006800-209008200	Enhancers	Duodenum Mucosa	Duodenum
10	chr2:209006800-209008200	Enhancers	Fetal Stomach	stomach
11	chr2:209007000-209007800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:209007000-209007800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:209007000-209007800	Enhancers	Fetal Muscle Leg	muscle
14	chr2:209007000-209008200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:209007200-209008200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:209007200-209008600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr2:209007400-209007800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr2:209007400-209007800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:209007400-209007800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr2:209007400-209007800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr2:209007400-209008000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:209007400-209008000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr2:209007600-209007800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr2:209007600-209008000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr2:209007600-209008200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr2:209007600-209008400	Enhancers	Stomach Mucosa	stomach
27	chr2:209007600-209008600	Enhancers	HepG2	liver

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