Variant report

Variant	rs1431918
Chromosome Location	chr8:62885853-62885854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11989441	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11996717	0.83[AFR][1000 genomes]
rs11998202	0.82[AFR][1000 genomes]
rs12543953	0.82[AFR][1000 genomes]
rs12545751	0.92[ASN][1000 genomes]
rs12546000	0.83[AFR][1000 genomes]
rs13275771	0.83[AFR][1000 genomes]
rs1431925	0.83[AFR][1000 genomes]
rs2217548	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738934	0.82[AFR][1000 genomes]
rs6988855	0.85[AFR][1000 genomes]
rs6991622	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996844	0.82[AFR][1000 genomes]
rs7815312	0.82[AFR][1000 genomes]
rs7832142	0.81[AFR][1000 genomes]
rs9650147	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv528894	chr8:62885688-62885853	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3378804	chr8:62885840-62886289	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62885400-62886600	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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