Variant report

Variant	rs143216744
Chromosome Location	chr9:1083728-1083729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:1050560..1053222-chr9:1082736..1084655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173253	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025492	chr9:478813-1157169	Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv539897	chr9:478813-1157169	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv613037	chr9:643453-1138368	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv817248	chr9:706283-1457665	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1034070	chr9:911265-1152351	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1016222	chr9:999390-1284180	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1025752	chr9:1003311-1124524	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1027466	chr9:1007196-1097053	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1033117	chr9:1007196-1129306	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1016321	chr9:1034594-1592366	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv539908	chr9:1034594-1592366	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv948914	chr9:1050981-1311310	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv1825318	chr9:1054067-1121594	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2758176	chr9:1055347-1529128	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	esv2759656	chr9:1055347-1529128	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv892015	chr9:1056101-1097089	Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv892016	chr9:1057797-1100738	Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv2752273	chr9:1062218-1824888	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv892017	chr9:1073148-1097089	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1026043	chr9:1079462-1732502	Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv539909	chr9:1079462-1732502	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:1082800-1084000	Active TSS	NHDF-Ad	bronchial
2	chr9:1083000-1083800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:1083000-1084000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:1083000-1084200	Active TSS	Brain Cingulate Gyrus	brain
5	chr9:1083200-1083800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr9:1083200-1083800	Active TSS	Cortex derived primary cultured neurospheres	brain
7	chr9:1083200-1083800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:1083200-1083800	Active TSS	Adipose Nuclei	Adipose
9	chr9:1083200-1083800	Active TSS	Brain Hippocampus Middle	brain
10	chr9:1083200-1083800	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr9:1083200-1083800	Active TSS	HSMM	muscle
12	chr9:1083200-1084000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
13	chr9:1083200-1084000	Active TSS	Brain Anterior Caudate	brain
14	chr9:1083200-1084000	Active TSS	Psoas Muscle	Psoas
15	chr9:1083400-1083800	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr9:1083400-1083800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:1083400-1083800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr9:1083400-1083800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:1083400-1083800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:1083400-1083800	Active TSS	Muscle Satellite Cultured Cells	--
21	chr9:1083400-1083800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:1083400-1083800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:1083400-1083800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:1083400-1083800	Active TSS	Brain Substantia Nigra	brain
25	chr9:1083400-1083800	Active TSS	Colon Smooth Muscle	Colon
26	chr9:1083400-1083800	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr9:1083400-1083800	Active TSS	Fetal Brain Female	brain
28	chr9:1083400-1083800	Bivalent/Poised TSS	Fetal Lung	lung
29	chr9:1083400-1083800	Active TSS	Fetal Muscle Leg	muscle
30	chr9:1083400-1083800	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr9:1083400-1083800	Active TSS	Right Atrium	heart
32	chr9:1083400-1083800	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr9:1083400-1083800	Active TSS	HSMMtube	muscle
34	chr9:1083400-1084000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr9:1083400-1084000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr9:1083400-1084000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr9:1083400-1084000	Active TSS	Brain Angular Gyrus	brain
38	chr9:1083400-1084000	Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr9:1083400-1084000	Active TSS	A549	lung
40	chr9:1083400-1084200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:1083600-1083800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:1083600-1083800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:1083600-1083800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr9:1083600-1083800	Flanking Active TSS	Fetal Muscle Trunk	muscle
45	chr9:1083600-1084000	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr9:1083600-1084000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:1083600-1084000	Enhancers	Aorta	Aorta
48	chr9:1083600-1084000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
49	chr9:1083600-1084000	Active TSS	Rectal Smooth Muscle	rectum

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