Variant report

Variant	rs143262497
Chromosome Location	chr11:102254649-102254650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102249961..102251726-chr11:102253598..102255755,2	MCF-7	breast:
2	chr11:102248264..102252607-chr11:102254187..102258026,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2484190	chr11:102253337-102254883	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102225600-102255400	Weak transcription	Fetal Heart	heart
3	chr11:102232400-102259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:102232600-102255000	Weak transcription	Right Atrium	heart
5	chr11:102235600-102255000	Weak transcription	Right Ventricle	heart
6	chr11:102235800-102259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:102237000-102255400	Weak transcription	Aorta	Aorta
8	chr11:102237000-102263800	Weak transcription	Small Intestine	intestine
9	chr11:102239600-102259000	Weak transcription	Fetal Brain Male	brain
10	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:102245600-102255200	Strong transcription	Placenta	Placenta
12	chr11:102245600-102256600	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:102245600-102258600	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr11:102245600-102266200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:102245800-102257200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:102245800-102260400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:102245800-102260800	Strong transcription	HSMM	muscle
19	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:102246000-102255000	Weak transcription	Lung	lung
21	chr11:102246000-102255200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:102246000-102255800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:102246000-102261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:102246200-102255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:102246200-102255000	Weak transcription	Esophagus	oesophagus
27	chr11:102246200-102255000	Weak transcription	Spleen	Spleen
28	chr11:102246200-102255400	Strong transcription	Fetal Thymus	thymus
29	chr11:102246200-102261800	Weak transcription	Gastric	stomach
30	chr11:102246200-102263800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:102246200-102267000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:102246200-102274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:102246800-102256800	Weak transcription	A549	lung
37	chr11:102246800-102277800	Weak transcription	Stomach Mucosa	stomach
38	chr11:102247400-102275400	Strong transcription	Primary B cells from cord blood	blood
39	chr11:102247800-102255200	Weak transcription	Pancreas	Pancrea
40	chr11:102247800-102261800	Strong transcription	Liver	Liver
41	chr11:102247800-102263600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:102248200-102258000	Strong transcription	Osteobl	bone
43	chr11:102248400-102255000	Strong transcription	Primary T cells from cord blood	blood
44	chr11:102248600-102265600	Strong transcription	NH-A	brain
45	chr11:102249200-102255000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:102249600-102261600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:102249800-102255200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:102250200-102261200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:102250400-102256200	Weak transcription	HepG2	liver
50	chr11:102250400-102259000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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