Variant report

Variant	rs1432688
Chromosome Location	chr5:147603178-147603179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr5:147603052-147604411	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr5:147602992-147604354	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147569510..147572351-chr5:147602489..147604362,3	K562	blood:
2	chr5:147602522..147604396-chr5:147607993..147610533,2	K562	blood:

Variant related genes	Relation type
HMGN1P16	TF binding region

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10037138	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10038416	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10045567	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10055415	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10058023	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10067624	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10071354	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10075545	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10078359	0.83[AMR][1000 genomes]
rs1023714	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10463281	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10463282	0.83[AMR][1000 genomes]
rs10463404	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10463405	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10477364	0.85[CEU][hapmap]
rs10477366	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11168042	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1119451	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1124209	0.85[CEU][hapmap]
rs1158939	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1158940	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1159203	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1159204	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1159205	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11741093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11953708	0.82[CHB][hapmap]
rs11960009	0.81[CHB][hapmap]
rs12186491	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12516071	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12517179	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12653739	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12654024	0.83[EUR][1000 genomes]
rs13152992	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13155371	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13178303	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13179719	0.83[AMR][1000 genomes]
rs1368304	0.83[EUR][1000 genomes]
rs1368307	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1368308	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1368309	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1368310	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1368313	0.83[AMR][1000 genomes]
rs1432693	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1432694	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1432695	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1432696	0.83[AMR][1000 genomes]
rs1432698	0.84[EUR][1000 genomes]
rs1432699	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1432701	0.83[AMR][1000 genomes]
rs1432702	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1432703	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1583279	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1583284	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1594647	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17107992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1897534	0.83[AMR][1000 genomes]
rs2082389	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2400500	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2895730	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2963725	0.89[EUR][1000 genomes]
rs2963727	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4470757	0.80[AMR][1000 genomes]
rs4532356	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4705237	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705239	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4705246	0.81[EUR][1000 genomes]
rs6580537	0.83[EUR][1000 genomes]
rs6580538	0.83[EUR][1000 genomes]
rs6874673	0.81[CHB][hapmap]
rs6876753	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6893320	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6896453	0.87[CHB][hapmap]
rs7708483	0.82[CHB][hapmap]
rs7715343	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7726415	0.83[AMR][1000 genomes]
rs7732168	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9325090	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9325091	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9325092	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs986673	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9885303	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9986324	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147594000-147604400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:147595600-147603600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:147601000-147603800	Active TSS	Hela-S3	cervix

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