Variant report

Variant	rs1432839
Chromosome Location	chr5:146758968-146758969
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10515582	0.87[ASN][1000 genomes]
rs10515583	0.95[ASN][1000 genomes]
rs11167988	0.89[ASN][1000 genomes]
rs11167989	0.89[ASN][1000 genomes]
rs12513884	0.89[ASN][1000 genomes]
rs12514302	0.83[ASN][1000 genomes]
rs12651731	0.82[ASN][1000 genomes]
rs1432838	0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1544816	0.84[ASN][1000 genomes]
rs17106560	0.94[ASN][1000 genomes]
rs17106572	0.97[ASN][1000 genomes]
rs17106575	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17106590	0.98[ASN][1000 genomes]
rs17106592	1.00[ASN][1000 genomes]
rs17106597	1.00[ASN][1000 genomes]
rs17106606	0.94[ASN][1000 genomes]
rs17106607	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2895681	0.89[ASN][1000 genomes]
rs3749721	0.86[ASN][1000 genomes]
rs3805533	0.86[ASN][1000 genomes]
rs3805534	0.82[ASN][1000 genomes]
rs3805535	0.81[ASN][1000 genomes]
rs4642416	0.89[ASN][1000 genomes]
rs61405762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73262265	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7714240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs972302	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146747800-146762400	Weak transcription	Fetal Kidney	kidney
2	chr5:146750000-146766200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:146750400-146762000	Weak transcription	Aorta	Aorta
4	chr5:146755600-146762400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:146757800-146760000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:146758000-146759600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:146758200-146759600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:146758200-146762400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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