Variant report

Variant	rs143303030
Chromosome Location	chr6:30958781-30958782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30949652..30953663-chr6:30954091..30959809,5	K562	blood:

Variant related genes	Relation type
ENSG00000204544	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1031677	chr6:30857542-30972865	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv3358044	chr6:30940552-31000175	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1805090	chr6:30942284-30966453	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1023108	chr6:30944982-30990490	Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv884127	chr6:30955681-30972121	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv462745	chr6:30955681-30987176	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv601485	chr6:30955681-30987176	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv601486	chr6:30957618-30980015	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv884128	chr6:30957766-30972121	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30950800-30972200	Weak transcription	Right Atrium	heart
2	chr6:30955800-30964400	Weak transcription	Esophagus	oesophagus
3	chr6:30956800-30964400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:30957800-30959000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:30957800-30959000	Enhancers	Fetal Thymus	thymus
6	chr6:30958000-30958800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:30958000-30958800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:30958000-30959000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:30958200-30958800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:30958200-30958800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:30958200-30958800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:30958200-30958800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr6:30958200-30958800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:30958200-30958800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:30958200-30958800	Flanking Active TSS	GM12878-XiMat	blood
16	chr6:30958200-30959000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:30958400-30958800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:30958400-30958800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:30958400-30958800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:30958400-30958800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:30958400-30958800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:30958600-30958800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
23	chr6:30958600-30958800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:30958600-30959000	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:30958600-30959000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:30958600-30959000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:30958600-30959000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:30958600-30959000	Enhancers	Thymus	Thymus
29	chr6:30958600-30959000	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links