Variant report

Variant	rs1433053
Chromosome Location	chr5:107268885-107268886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10066241	0.81[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160744	0.81[YRI][hapmap]
rs17437183	0.90[CEU][hapmap];0.97[GIH][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17437482	0.87[TSI][hapmap]
rs4957730	1.00[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs7701221	0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107263000-107272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107267000-107270800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:107267400-107273800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:107267600-107270200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:107267600-107270600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:107267800-107273400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:107268400-107269800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:107268600-107269200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107268600-107269800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:107268600-107273800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:107268800-107269200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr5:107268800-107269800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:107268800-107269800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:107268800-107273200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:107268800-107273200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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