Variant report

Variant	rs1433055
Chromosome Location	chr5:107258976-107258977
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10039402	1.00[CHB][hapmap]
rs13161312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549924	1.00[CHB][hapmap]
rs17160709	1.00[JPT][hapmap]
rs17160710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107251600-107261000	Weak transcription	Aorta	Aorta
2	chr5:107254000-107259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:107254000-107262600	Weak transcription	Pancreas	Pancrea
4	chr5:107255200-107259600	Weak transcription	Dnd41	blood
5	chr5:107257400-107262000	Enhancers	Fetal Thymus	thymus
6	chr5:107257800-107261600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:107258000-107261800	Enhancers	Thymus	Thymus
8	chr5:107258200-107262400	Enhancers	Primary T cells from cord blood	blood
9	chr5:107258400-107259200	Enhancers	Fetal Kidney	kidney
10	chr5:107258400-107259800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:107258600-107260600	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links