Variant report

Variant	rs1433174
Chromosome Location	chr8:108518274-108518275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10087541	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433172	0.88[CEU][hapmap];0.85[TSI][hapmap]
rs17302560	0.91[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41323951	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825455	chr8:108504907-108518274	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1433174	DPYS	cis	cerebellum	SCAN
rs1433174	FAM19A5	trans	parietal	SCAN
rs1433174	LRP12	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108511800-108518600	Weak transcription	Fetal Kidney	kidney
2	chr8:108512200-108518600	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:108512200-108520200	Weak transcription	Psoas Muscle	Psoas
4	chr8:108512400-108521200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:108515800-108518600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:108516000-108519000	Enhancers	NH-A	brain
7	chr8:108516000-108519200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:108516200-108518800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:108516400-108518800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:108516400-108519000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:108516400-108519000	Enhancers	HSMM	muscle
12	chr8:108516600-108518800	Enhancers	HUVEC	blood vessel
13	chr8:108517200-108519000	Enhancers	NHDF-Ad	bronchial
14	chr8:108517400-108519000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:108517800-108518800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:108518000-108518400	Flanking Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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