Variant report

Variant	rs1433176
Chromosome Location	chr8:108392928-108392929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2514862	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1433176	TM7SF4	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108345200-108393200	Weak transcription	Aorta	Aorta
2	chr8:108382200-108393000	Weak transcription	Ovary	ovary
3	chr8:108387000-108394800	Weak transcription	Fetal Heart	heart
4	chr8:108387200-108395200	Weak transcription	Psoas Muscle	Psoas
5	chr8:108388800-108394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:108389800-108401200	Weak transcription	Fetal Kidney	kidney
7	chr8:108390000-108394600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:108390000-108394800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:108390000-108395400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:108390200-108395200	Weak transcription	Osteobl	bone
11	chr8:108390400-108397000	Weak transcription	Fetal Lung	lung
12	chr8:108391600-108395400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:108392400-108394000	Strong transcription	Primary hematopoietic stem cells	blood
14	chr8:108392400-108394000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:108392400-108396000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:108392800-108393800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr8:108392800-108393800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:108392800-108393800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:108392800-108393800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:108392800-108394000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:108392800-108395000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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