Variant report

Variant	rs143340186
Chromosome Location	chr10:93628584-93628585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93627211..93629646-chr10:93632804..93634788,2	MCF-7	breast:
2	chr10:93623670..93626355-chr10:93627411..93630158,2	MCF-7	breast:
3	chr10:93627568..93629782-chr10:93667087..93669916,2	MCF-7	breast:
4	chr10:93621243..93623649-chr10:93626031..93628868,2	K562	blood:
5	chr10:93576673..93578768-chr10:93627898..93630166,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv511445	chr10:93627158-93635541	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93572600-93629000	Weak transcription	Stomach Mucosa	stomach
2	chr10:93598400-93629000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93599200-93629000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:93599600-93634600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93606400-93630200	Weak transcription	Esophagus	oesophagus
6	chr10:93608800-93639200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:93608800-93643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:93618400-93639400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:93620600-93631000	Weak transcription	HepG2	liver
10	chr10:93621200-93628800	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:93621400-93628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:93621400-93629400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:93622400-93629000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:93622600-93639000	Weak transcription	Brain Germinal Matrix	brain
15	chr10:93622800-93639200	Weak transcription	Brain Angular Gyrus	brain
16	chr10:93624200-93629000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:93624200-93630200	Weak transcription	Brain Anterior Caudate	brain
18	chr10:93624200-93634400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:93624200-93639200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:93624800-93629200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:93625600-93628800	Weak transcription	Placenta	Placenta
22	chr10:93625800-93628600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:93625800-93632200	Weak transcription	HSMM	muscle
24	chr10:93625800-93634400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:93625800-93639000	Weak transcription	Fetal Brain Female	brain
26	chr10:93626000-93628600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:93626000-93628600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:93626000-93628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:93626000-93629000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr10:93626000-93629000	Weak transcription	HMEC	breast
31	chr10:93626000-93629200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:93626000-93629800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:93626200-93628800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:93626200-93629000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:93626200-93629000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:93626200-93630000	Weak transcription	NHEK	skin
37	chr10:93626200-93630200	Weak transcription	Adipose Nuclei	Adipose
38	chr10:93626200-93634800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:93626200-93639600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:93626200-93643000	Weak transcription	HSMMtube	muscle
41	chr10:93626400-93628600	Weak transcription	Liver	Liver
42	chr10:93626400-93628600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr10:93626400-93629000	Weak transcription	Fetal Intestine Large	intestine
44	chr10:93626400-93629000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:93626600-93628600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:93627000-93634400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:93627600-93629000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:93627600-93639000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:93627600-93639600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:93627800-93639000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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