Variant report

Variant	rs143376293
Chromosome Location	chr5:1591182-1591183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881664	chr5:1377172-1594879	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv933805	chr5:1450724-1941619	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv880471	chr5:1466813-1598468	Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv880740	chr5:1468287-1671200	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
5	nsv881554	chr5:1468287-1696932	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
6	nsv881644	chr5:1478021-1597272	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
7	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
8	nsv881096	chr5:1503610-1671200	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
9	nsv596879	chr5:1519079-1624351	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv881574	chr5:1537141-1598468	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv10657	chr5:1544428-1633373	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv881282	chr5:1549771-1597272	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv596885	chr5:1552255-1624351	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	esv3418475	chr5:1590952-1594050	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	esv3429404	chr5:1590952-1594050	Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1565800-1594200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr5:1566200-1594200	Weak transcription	Brain Substantia Nigra	brain
3	chr5:1568000-1594000	Weak transcription	K562	blood
4	chr5:1568400-1594000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:1568400-1594000	Weak transcription	Right Ventricle	heart
6	chr5:1568800-1594200	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:1568800-1594200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:1569000-1591600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:1569000-1594000	Weak transcription	HSMM	muscle
10	chr5:1569000-1594200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:1569000-1594200	Weak transcription	Psoas Muscle	Psoas
12	chr5:1569400-1594000	Weak transcription	HSMMtube	muscle
13	chr5:1569400-1594000	Weak transcription	HUVEC	blood vessel
14	chr5:1569400-1594200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:1569600-1594000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:1569600-1594400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:1569800-1594000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:1570600-1594000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:1571200-1594400	Weak transcription	Stomach Mucosa	stomach
20	chr5:1571400-1594000	Weak transcription	A549	lung
21	chr5:1571800-1594000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:1571800-1594000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr5:1571800-1594000	Weak transcription	Small Intestine	intestine
24	chr5:1572600-1594000	Weak transcription	Placenta	Placenta
25	chr5:1573200-1594200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:1578600-1594000	Weak transcription	Esophagus	oesophagus
27	chr5:1579600-1594000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:1579800-1594000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:1582400-1595000	Weak transcription	Fetal Heart	heart
30	chr5:1584400-1594000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:1585200-1593400	Weak transcription	Fetal Thymus	thymus
32	chr5:1585200-1593800	Weak transcription	Fetal Brain Male	brain
33	chr5:1585200-1594000	Weak transcription	Fetal Kidney	kidney
34	chr5:1585200-1594000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:1585400-1594000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr5:1585600-1593600	Strong transcription	Fetal Stomach	stomach
37	chr5:1586000-1593800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr5:1586400-1594000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr5:1587200-1592400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:1587400-1591400	Strong transcription	Fetal Muscle Trunk	muscle
41	chr5:1587400-1591800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:1587400-1592600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr5:1587400-1593200	Strong transcription	Dnd41	blood
44	chr5:1587400-1593400	Strong transcription	Fetal Intestine Small	intestine
45	chr5:1587600-1592600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:1587800-1592600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr5:1588000-1591200	Weak transcription	Brain Germinal Matrix	brain
48	chr5:1588000-1592200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr5:1588000-1593400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr5:1588000-1594000	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links