Variant report

Variant	rs1433829
Chromosome Location	chr9:18862267-18862268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1368772	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1433831	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4977454	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs6475265	0.84[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs731370	0.84[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1433829	IFNB1	cis	cerebellum	SCAN

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18858800-18862600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:18858800-18862600	Weak transcription	NHLF	lung
3	chr9:18858800-18876600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:18860600-18863200	Enhancers	Fetal Heart	heart
5	chr9:18860800-18864800	Enhancers	Fetal Lung	lung
6	chr9:18860800-18864800	Enhancers	Fetal Stomach	stomach
7	chr9:18861200-18862400	Enhancers	Left Ventricle	heart
8	chr9:18861200-18862400	Enhancers	Ovary	ovary
9	chr9:18861200-18862400	Enhancers	Rectal Smooth Muscle	rectum
10	chr9:18861200-18862400	Enhancers	Right Atrium	heart
11	chr9:18861200-18862400	Enhancers	Right Ventricle	heart
12	chr9:18861200-18862600	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr9:18861200-18862600	Enhancers	HSMMtube	muscle
14	chr9:18861200-18862800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr9:18861200-18862800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr9:18861200-18865000	Enhancers	Fetal Muscle Leg	muscle
17	chr9:18861400-18862400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:18861400-18862600	Enhancers	Fetal Kidney	kidney
19	chr9:18861600-18862400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr9:18861600-18862400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:18861600-18862400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:18861600-18862400	Active TSS	Brain Anterior Caudate	brain
23	chr9:18861600-18862400	Flanking Active TSS	Colon Smooth Muscle	Colon
24	chr9:18861600-18862400	Enhancers	Fetal Brain Male	brain
25	chr9:18861600-18862600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:18861600-18862600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:18861600-18862800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:18861600-18863000	Enhancers	Fetal Muscle Trunk	muscle
29	chr9:18861600-18863800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:18861800-18862400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr9:18861800-18862400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:18861800-18862400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr9:18861800-18862400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:18861800-18862400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:18861800-18862400	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr9:18861800-18862600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr9:18861800-18862600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr9:18861800-18862600	Enhancers	NHDF-Ad	bronchial
39	chr9:18861800-18862800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr9:18861800-18862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr9:18861800-18863200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:18861800-18863200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:18862000-18862400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:18862000-18862400	Enhancers	Aorta	Aorta
45	chr9:18862000-18862400	Enhancers	HSMM	muscle
46	chr9:18862000-18862600	Enhancers	NH-A	brain
47	chr9:18862200-18862400	Flanking Active TSS	Osteobl	bone
48	chr9:18862200-18862800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:18862200-18864400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links