Variant report

Variant	rs143391081
Chromosome Location	chr11:36645040-36645041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv518415	chr11:36644076-36661723	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
2	chr11:36630000-36678800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36630600-36649000	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:36630600-36661000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:36630600-36682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:36633600-36656000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:36640400-36648000	Weak transcription	HSMMtube	muscle
8	chr11:36640600-36649800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:36640800-36669400	Weak transcription	Aorta	Aorta
10	chr11:36641400-36650200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:36641400-36650600	Weak transcription	Right Ventricle	heart
12	chr11:36641400-36652600	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:36641400-36669400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:36641400-36669600	Weak transcription	Ovary	ovary
15	chr11:36641400-36681000	Weak transcription	Primary T cells from cord blood	blood
16	chr11:36641600-36646000	Weak transcription	Fetal Heart	heart
17	chr11:36641600-36653000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:36641600-36660400	Weak transcription	Fetal Stomach	stomach
19	chr11:36642000-36650200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:36642000-36655000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:36642000-36655200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:36642000-36681000	Weak transcription	Fetal Kidney	kidney
23	chr11:36642200-36649600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:36642200-36650000	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:36642200-36669600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:36643200-36647800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:36644800-36646400	Enhancers	Fetal Thymus	thymus
28	chr11:36645000-36645200	Flanking Active TSS	Thymus	Thymus
29	chr11:36645000-36645400	Flanking Active TSS	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links