The 2.0 version of rSNPBase

Variant report

Variant rs1434095
Chromosome Location chr2:179254330-179254331
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179201800-179268200 Weak transcription HSMM muscle
2 chr2:179210800-179257200 Weak transcription Pancreas Pancrea
3 chr2:179225000-179257800 Weak transcription Lung lung
4 chr2:179226600-179257200 Weak transcription Gastric stomach
5 chr2:179240000-179258200 Weak transcription NHEK skin
6 chr2:179240200-179256800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr2:179241800-179262600 Weak transcription Stomach Smooth Muscle stomach
8 chr2:179242200-179254600 Weak transcription Ovary ovary
9 chr2:179242200-179258600 Weak transcription Brain Germinal Matrix brain
10 chr2:179246000-179256200 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr2:179246600-179257200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr2:179247000-179254600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr2:179247800-179254600 Strong transcription Brain Inferior Temporal Lobe brain
14 chr2:179248000-179255000 Strong transcription Skeletal Muscle Male skeletal muscle
15 chr2:179248200-179257200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr2:179248600-179254400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr2:179249000-179254600 Weak transcription Fetal Muscle Leg muscle
18 chr2:179249000-179262600 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr2:179249000-179269000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr2:179249400-179255000 Weak transcription Fetal Brain Male brain
21 chr2:179249400-179259400 Weak transcription Left Ventricle heart
22 chr2:179249600-179255000 Weak transcription Psoas Muscle Psoas
23 chr2:179249600-179259800 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr2:179249600-179264000 Weak transcription Aorta Aorta
25 chr2:179249800-179254800 Weak transcription Fetal Muscle Trunk muscle
26 chr2:179250800-179254400 Weak transcription HSMMtube muscle
27 chr2:179250800-179255000 Weak transcription Brain Angular Gyrus brain
28 chr2:179250800-179266000 Weak transcription K562 blood
29 chr2:179251000-179268600 Weak transcription NH-A brain
30 chr2:179252000-179261000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr2:179252200-179257000 Weak transcription Muscle Satellite Cultured Cells --
32 chr2:179252200-179257000 Weak transcription Osteobl bone
33 chr2:179252200-179264200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr2:179252400-179254800 Weak transcription Adipose Nuclei Adipose
35 chr2:179252400-179259000 Weak transcription Fetal Intestine Small intestine
36 chr2:179252400-179262000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr2:179252600-179255400 Strong transcription Fetal Brain Female brain
38 chr2:179252600-179256000 Strong transcription Cortex derived primary cultured neurospheres brain
39 chr2:179253000-179255800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr2:179253000-179256200 Strong transcription Skeletal Muscle Female skeletal muscle
41 chr2:179253200-179256200 Strong transcription HMEC breast
42 chr2:179253200-179269200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr2:179253400-179255800 Weak transcription Esophagus oesophagus
44 chr2:179253600-179254400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr2:179253600-179255400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr2:179253600-179262800 Weak transcription Liver Liver
47 chr2:179253600-179266000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr2:179254000-179254600 Strong transcription Brain Anterior Caudate brain
49 chr2:179254000-179255800 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015