Variant report

Variant	rs1434273
Chromosome Location	chr9:8817060-8817061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10116689	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10118318	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs10119815	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10120450	0.89[CEU][hapmap];0.80[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10120478	0.93[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs10120501	0.92[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10121203	0.89[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10121702	0.95[ASN][1000 genomes]
rs10124428	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10739173	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10758996	0.89[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10758997	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10758998	0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10815961	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10815964	0.92[CEU][hapmap];0.80[CHB][hapmap]
rs10815965	0.92[ASN][1000 genomes]
rs10977314	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1434253	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1434254	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1434255	0.90[ASN][1000 genomes]
rs1434256	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs1434258	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs1836227	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1836229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1836230	0.93[CEU][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1836231	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1865338	0.87[ASN][1000 genomes]
rs1972798	0.87[ASN][1000 genomes]
rs2053125	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2099406	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2570295	0.84[ASN][1000 genomes]
rs2570299	0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs2570964	0.84[ASN][1000 genomes]
rs4372066	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6477358	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7024487	0.87[ASN][1000 genomes]
rs7035236	0.87[ASN][1000 genomes]
rs7048621	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7048788	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7853143	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7863423	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7864437	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7864464	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7864663	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7864670	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv892240	chr9:8796449-8834108	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv892241	chr9:8805462-8822267	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8794200-8821800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:8794800-8825600	Weak transcription	Ovary	ovary
3	chr9:8808000-8825600	Weak transcription	Aorta	Aorta
4	chr9:8810600-8822600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:8814200-8817200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr9:8814200-8817400	Enhancers	Brain Hippocampus Middle	brain
7	chr9:8814200-8817600	Enhancers	Brain Angular Gyrus	brain
8	chr9:8814200-8817800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:8814200-8818400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:8814400-8817200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:8814400-8818800	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:8815200-8817200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:8815200-8817200	Enhancers	Brain Substantia Nigra	brain
14	chr9:8815200-8817400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:8815200-8817600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:8815200-8818000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr9:8815400-8817600	Enhancers	Fetal Brain Female	brain
18	chr9:8815400-8818000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:8815600-8817200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:8815600-8817600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:8815600-8817800	Enhancers	Brain Anterior Caudate	brain
22	chr9:8815800-8817200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:8815800-8817200	Enhancers	Fetal Lung	lung
24	chr9:8815800-8817600	Enhancers	Brain Germinal Matrix	brain
25	chr9:8816000-8817200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:8816000-8817600	Enhancers	Fetal Kidney	kidney
27	chr9:8816400-8817200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr9:8816600-8817200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr9:8816600-8817400	Weak transcription	Fetal Brain Male	brain
30	chr9:8816600-8818200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:8816600-8825200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:8816800-8819800	Weak transcription	Liver	Liver
33	chr9:8817000-8832000	Weak transcription	Fetal Heart	heart

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