Variant report

Variant	rs143432496
Chromosome Location	chr19:45252715-45252716
allele	-/TAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:45252692-45253136	A549	lung:	n/a	chr19:45253056-45253069
2	MTA3	chr19:45252537-45253543	GM12878	blood:	n/a	n/a
3	POLR2A	chr19:45252552-45253217	PFSK-1	brain:	n/a	n/a
4	CHD1	chr19:45250110-45253686	IMR90	lung:	n/a	chr19:45251838-45251848
5	BCL3	chr19:45248078-45253687	A549	lung:	n/a	chr19:45248561-45248574 chr19:45250739-45250752 chr19:45248567-45248580 chr19:45250771-45250780
6	WRNIP1	chr19:45252626-45253469	GM12878	blood:	n/a	n/a
7	POLR2A	chr19:45252471-45253044	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr19:45251877-45253521	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr19:45249872-45253681	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr19:45252236-45253600	U87	brain:	n/a	n/a
11	FOSL2	chr19:45252606-45253666	A549	lung:	n/a	chr19:45252886-45252895
12	CEBPB	chr19:45252626-45253133	Hela-S3	cervix:	n/a	chr19:45253056-45253069
13	POLR2A	chr19:45252292-45253527	A549	lung:	n/a	n/a
14	TCF12	chr19:45247727-45253774	A549	lung:	n/a	chr19:45248399-45248407 chr19:45249956-45249966
15	POLR2A	chr19:45252582-45252752	HUVEC	blood vessel:	n/a	n/a
16	POLR2A	chr19:45252618-45252792	GM12878	blood:	n/a	n/a
17	POLR2A	chr19:45252259-45253459	U87	brain:	n/a	n/a
18	MAZ	chr19:45249597-45253664	IMR90	lung:	n/a	chr19:45252537-45252546 chr19:45250878-45250887 chr19:45252540-45252550
19	POLR2A	chr19:45252230-45253606	U87	brain:	n/a	n/a
20	POLR2A	chr19:45252276-45252740	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr19:45252561-45253654	PANC-1	pancreas:	n/a	n/a
22	BCL3	chr19:45247680-45253680	A549	lung:	n/a	chr19:45248561-45248574 chr19:45250739-45250752 chr19:45248567-45248580 chr19:45250771-45250780
23	CEBPB	chr19:45252644-45252964	IMR90	lung:	n/a	n/a
24	POLR2A	chr19:45250394-45253526	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr19:45252410-45253639	GM12878	blood:	n/a	n/a
26	RCOR1	chr19:45252361-45253668	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:45164861..45166953-chr19:45250378..45253353,2	MCF-7	breast:
2	chr19:45252359..45252902-chr9:34179841..34180546,2	Hela-S3	cervix:
3	chr19:45150946..45153817-chr19:45251773..45254167,2	MCF-7	breast:
4	chr19:45251797..45254336-chr19:45349633..45353327,3	K562	blood:
5	chr19:45250646..45253385-chr19:45348787..45352398,5	MCF-7	breast:
6	chr19:45249129..45253567-chr19:45309146..45313529,6	MCF-7	breast:
7	chr19:45250044..45254049-chr19:45347224..45351011,6	MCF-7	breast:
8	chr19:45250785..45254453-chr19:45309921..45313662,4	MCF-7	breast:
9	chr19:45252053..45254233-chr19:45351379..45354120,2	MCF-7	breast:
10	chr19:45252003..45254960-chr19:45323071..45325536,2	K562	blood:
11	chr19:45198197..45200350-chr19:45252403..45254162,3	K562	blood:
12	chr19:45222394..45233722-chr19:45248498..45258065,33	MCF-7	breast:
13	chr16:75682151..75683053-chr19:45252133..45253014,2	Hela-S3	cervix:

Variant related genes	Relation type
BCL3	TF binding region
ENSG00000130202	Chromatin interaction
ENSG00000187244	Chromatin interaction
ENSG00000073008	Chromatin interaction
ENSG00000166848	Chromatin interaction
ENSG00000252200	Chromatin interaction
ENSG00000065427	Chromatin interaction
ENSG00000186567	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912116	chr19:45146103-45298069	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv833841	chr19:45208486-45308043	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	esv3335183	chr19:45225161-45253316	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3324918	chr19:45250737-45253285	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3447789	chr19:45251012-45253160	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45249800-45253200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr19:45250200-45252800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr19:45250200-45252800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr19:45250200-45252800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr19:45250400-45252800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr19:45250400-45252800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:45250400-45252800	Active TSS	Psoas Muscle	Psoas
8	chr19:45250400-45253200	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr19:45250400-45254000	Active TSS	Sigmoid Colon	Sigmoid Colon
10	chr19:45250600-45252800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr19:45250600-45252800	Active TSS	Duodenum Mucosa	Duodenum
12	chr19:45250600-45253000	Active TSS	Right Ventricle	heart
13	chr19:45250600-45253000	Active TSS	HSMM	muscle
14	chr19:45250600-45253200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:45250600-45253200	Active TSS	Liver	Liver
16	chr19:45250600-45253200	Active TSS	Fetal Kidney	kidney
17	chr19:45250600-45253200	Active TSS	Left Ventricle	heart
18	chr19:45250600-45253200	Active TSS	Ovary	ovary
19	chr19:45250600-45253200	Active TSS	Right Atrium	heart
20	chr19:45250600-45253200	Active TSS	NHLF	lung
21	chr19:45250600-45253400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr19:45250600-45253400	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr19:45250800-45253000	Active TSS	A549	lung
24	chr19:45250800-45253200	Active TSS	Brain Angular Gyrus	brain
25	chr19:45250800-45253200	Active TSS	Esophagus	oesophagus
26	chr19:45251000-45252800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr19:45251000-45253000	Active TSS	Aorta	Aorta
28	chr19:45251000-45253000	Active TSS	Spleen	Spleen
29	chr19:45251000-45253200	Active TSS	Lung	lung
30	chr19:45251000-45253400	Active TSS	Small Intestine	intestine
31	chr19:45251200-45253200	Active TSS	Pancreas	Pancrea
32	chr19:45251400-45252800	Active TSS	Monocytes-CD14+_RO01746	blood
33	chr19:45251600-45252800	Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr19:45251600-45252800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:45251600-45252800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr19:45251600-45252800	Active TSS	Colonic Mucosa	Colon
37	chr19:45251600-45252800	Active TSS	Fetal Intestine Small	intestine
38	chr19:45251600-45252800	Active TSS	HMEC	breast
39	chr19:45251600-45252800	Active TSS	HSMMtube	muscle
40	chr19:45251600-45252800	Active TSS	K562	blood
41	chr19:45251600-45253000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:45251600-45253000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr19:45251600-45253000	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr19:45251600-45253000	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr19:45251600-45253000	Active TSS	GM12878-XiMat	blood
46	chr19:45251600-45253200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr19:45251600-45253200	Active TSS	Brain Anterior Caudate	brain
48	chr19:45251600-45253200	Active TSS	Hela-S3	cervix
49	chr19:45251600-45253800	Active TSS	NHDF-Ad	bronchial
50	chr19:45251600-45254800	Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links