Variant report

Variant	rs143444248
Chromosome Location	chr13:98225354-98225355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98221400-98234200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:98222600-98229200	Weak transcription	HepG2	liver
3	chr13:98224600-98225600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:98225000-98225600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:98225000-98225600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:98225000-98225800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:98225200-98225400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr13:98225200-98225400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:98225200-98225400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:98225200-98225400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr13:98225200-98225400	Enhancers	Fetal Lung	lung
12	chr13:98225200-98225600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:98225200-98225600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:98225200-98225600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:98225200-98225600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:98225200-98225600	Enhancers	Fetal Intestine Small	intestine
17	chr13:98225200-98225800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:98225200-98225800	Enhancers	NHDF-Ad	bronchial
19	chr13:98225200-98226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links