Variant report

Variant	rs143448352
Chromosome Location	chr5:177655273-177655274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:177655042-177655335	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr5:177654971-177655299	MCF10A-Er-Src	breast:	n/a	chr5:177655151-177655161
3	POLR2A	chr5:177654825-177655363	GM12878	blood:	n/a	n/a
4	FOS	chr5:177654967-177655434	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr5:177654801-177655374	MCF10A-Er-Src	breast:	n/a	chr5:177655151-177655161
6	FOS	chr5:177654982-177655287	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr5:177653417-177655906	K562	blood:	n/a	n/a
8	POLR2A	chr5:177654925-177655758	HepG2	liver:	n/a	n/a
9	POLR2A	chr5:177653368-177655971	A549	lung:	n/a	n/a

Variant related genes	Relation type
PHYKPL	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
5	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
6	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
7	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1018031	chr5:177655010-177746378	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv537969	chr5:177655010-177746378	Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	nsv883195	chr5:177655194-177690539	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv883196	chr5:177655194-177690978	Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv883197	chr5:177655194-177707204	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177635800-177657000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr5:177639400-177657600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:177640400-177655600	Weak transcription	Right Atrium	heart
4	chr5:177643400-177656400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:177645400-177656800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr5:177645400-177656800	Strong transcription	Dnd41	blood
7	chr5:177646200-177657000	Weak transcription	Fetal Brain Male	brain
8	chr5:177646600-177657400	Strong transcription	Thymus	Thymus
9	chr5:177646800-177658000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:177647800-177657000	Strong transcription	Brain Germinal Matrix	brain
11	chr5:177648000-177656000	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr5:177648000-177656800	Strong transcription	Primary B cells from cord blood	blood
13	chr5:177648000-177658000	Strong transcription	Fetal Thymus	thymus
14	chr5:177648200-177657000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:177648200-177657000	Strong transcription	NHLF	lung
16	chr5:177648200-177657400	Strong transcription	Fetal Brain Female	brain
17	chr5:177648200-177657800	Genic enhancers	Fetal Intestine Large	intestine
18	chr5:177648600-177656400	Strong transcription	GM12878-XiMat	blood
19	chr5:177648600-177658000	Strong transcription	Spleen	Spleen
20	chr5:177649000-177657400	Strong transcription	Primary T cells from cord blood	blood
21	chr5:177649400-177655600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr5:177649400-177657000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr5:177649400-177657200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:177649400-177657200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr5:177649600-177657800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr5:177650200-177656600	Weak transcription	Brain Angular Gyrus	brain
27	chr5:177650600-177655400	Weak transcription	HUVEC	blood vessel
28	chr5:177651000-177657000	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr5:177651200-177656200	Strong transcription	Lung	lung
30	chr5:177651400-177655600	Strong transcription	Adipose Nuclei	Adipose
31	chr5:177651400-177658000	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr5:177651600-177657800	Strong transcription	Fetal Muscle Leg	muscle
33	chr5:177651600-177658000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:177651600-177658000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:177651800-177656800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr5:177651800-177657000	Strong transcription	Right Ventricle	heart
37	chr5:177651800-177658000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:177652000-177655400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr5:177652000-177657000	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr5:177652000-177657000	Strong transcription	Placenta	Placenta
41	chr5:177652000-177658000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr5:177652000-177658000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:177652000-177658200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:177652200-177657600	Genic enhancers	Liver	Liver
45	chr5:177652400-177655400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr5:177652800-177658200	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr5:177653600-177657000	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:177653600-177657600	Genic enhancers	Duodenum Mucosa	Duodenum
49	chr5:177653600-177658200	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr5:177653600-177658200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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