Variant report
| Variant | rs1434577 |
|---|---|
| Chromosome Location | chr19:45010116-45010117 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000167384 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10407032 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1235382 | 0.90[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap] |
| rs12975841 | 0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs1727731 | 1.00[ASW][hapmap] |
| rs17727484 | 1.00[AFR][1000 genomes] |
| rs2020083 | 1.00[ASW][hapmap] |
| rs2293164 | 1.00[ASW][hapmap] |
| rs2571163 | 1.00[ASW][hapmap];1.00[MEX][hapmap] |
| rs2571169 | 1.00[MEX][hapmap] |
| rs2722697 | 1.00[ASW][hapmap] |
| rs2722699 | 1.00[ASW][hapmap];1.00[MEX][hapmap] |
| rs2722700 | 1.00[ASW][hapmap];1.00[MEX][hapmap] |
| rs2722702 | 1.00[ASW][hapmap] |
| rs3745147 | 1.00[AFR][1000 genomes] |
| rs45562836 | 1.00[AFR][1000 genomes] |
| rs954313 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv912112 | chr19:44853707-45011727 | Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1061350 | chr19:44869075-45035469 | Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
