Variant report

Variant	rs143465223
Chromosome Location	chr7:63360024-63360025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr7:63359973-63363196	SK-N-SH	brain:	n/a	chr7:63360694-63360709 chr7:63360692-63360707

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF680-4	chr7:63359985-63360168	ENSG00000236299.3
2	lnc-ZNF680-4	chr7:63359985-63360181	ENSG00000236299.3

Variant related genes	Relation type
ENSG00000236299	TF binding region
ENSG00000263891	TF binding region
ENSG00000226581	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv524380	chr7:63346886-63361078	Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv966815	chr7:63359141-63370063	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63359800-63360800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
2	chr7:63360000-63360200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:63360000-63360200	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:63360000-63360200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:63360000-63360200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:63360000-63360200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:63360000-63360200	Enhancers	Liver	Liver
8	chr7:63360000-63360200	Enhancers	Brain Hippocampus Middle	brain
9	chr7:63360000-63360200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:63360000-63360200	Enhancers	Gastric	stomach
11	chr7:63360000-63360200	Enhancers	Ovary	ovary
12	chr7:63360000-63360200	Enhancers	Pancreas	Pancrea
13	chr7:63360000-63360200	Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr7:63360000-63360200	Active TSS	Stomach Smooth Muscle	stomach
15	chr7:63360000-63360200	Enhancers	Spleen	Spleen
16	chr7:63360000-63360200	ZNF genes & repeats	Dnd41	blood
17	chr7:63360000-63360400	Active TSS	Adipose Nuclei	Adipose
18	chr7:63360000-63360400	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr7:63360000-63360400	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr7:63360000-63360400	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr7:63360000-63360400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr7:63360000-63360600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:63360000-63360600	Enhancers	Primary B cells from cord blood	blood
24	chr7:63360000-63360600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:63360000-63360600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:63360000-63360800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
27	chr7:63360000-63360800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr7:63360000-63361400	Active TSS	Duodenum Mucosa	Duodenum
29	chr7:63360000-63361800	Active TSS	Brain Substantia Nigra	brain
30	chr7:63360000-63362000	Active TSS	Primary T cells from cord blood	blood
31	chr7:63360000-63362000	Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr7:63360000-63362000	ZNF genes & repeats	Placenta	Placenta
33	chr7:63360000-63362000	Active TSS	Rectal Smooth Muscle	rectum
34	chr7:63360000-63362200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
35	chr7:63360000-63362400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:63360000-63362400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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