Variant report

Variant	rs143466056
Chromosome Location	chr9:26614161-26614162
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:26613936-26614172	LNCaP	prostate:	n/a	n/a
2	CTCF	chr9:26614140-26614290	GM12868	blood:	n/a	n/a
3	RAD21	chr9:26613955-26614164	IMR90	lung:	n/a	n/a
4	CTCF	chr9:26613721-26614329	A549	lung:	n/a	n/a
5	CTCF	chr9:26613873-26614179	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr9:26614160-26614310	HFF	foreskin:	n/a	n/a
7	CTCF	chr9:26614140-26614290	GM06990	blood:	n/a	n/a
8	RAD21	chr9:26613999-26614164	HepG2	liver:	n/a	n/a
9	SMC3	chr9:26613924-26614196	Hela-S3	cervix:	n/a	n/a
10	CTCF	chr9:26614140-26614290	HCM	heart:	n/a	n/a
11	CTCF	chr9:26613762-26614273	K562	blood:	n/a	n/a
12	CTCF	chr9:26614080-26614230	NHEK	skin:	n/a	n/a
13	CTCF	chr9:26614140-26614290	HPAF	blood vessel:	n/a	n/a
14	CTCF	chr9:26614100-26614250	GM12867	blood:	n/a	n/a
15	CTCF	chr9:26614140-26614290	HCT-116	colon:	n/a	n/a
16	RAD21	chr9:26613849-26614192	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr9:26613962-26614179	GM12878	blood:	n/a	n/a
18	CTCF	chr9:26614140-26614290	A549	lung:	n/a	n/a
19	CTCF	chr9:26614140-26614290	BE2_C	brain:	n/a	n/a
20	CTCF	chr9:26613956-26614209	GM12878	blood:	n/a	n/a
21	CTCF	chr9:26613895-26614175	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr9:26614100-26614250	HMF	breast:	n/a	n/a
23	CTCF	chr9:26614100-26614250	GM12866	blood:	n/a	n/a
24	CTCF	chr9:26614100-26614250	GM12864	blood:	n/a	n/a
25	CTCF	chr9:26613910-26614183	A549	lung:	n/a	n/a
26	CTCF	chr9:26614140-26614290	HEEpiC	esophagus:	n/a	n/a
27	RAD21	chr9:26613836-26614210	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr9:26614120-26614270	HFF-Myc	foreskin:	n/a	n/a
29	CTCF	chr9:26613948-26614201	IMR90	lung:	n/a	n/a
30	CTCF	chr9:26613921-26614162	GM19238	blood:	n/a	n/a
31	CTCF	chr9:26614060-26614210	GM12872	blood:	n/a	n/a
32	CTCF	chr9:26613846-26614230	A549	lung:	n/a	n/a
33	RAD21	chr9:26613781-26614235	HepG2	liver:	n/a	n/a
34	RAD21	chr9:26613777-26614204	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr9:26613952-26614170	MCF-7	breast:	n/a	n/a
36	CTCF	chr9:26613927-26614238	K562	blood:	n/a	n/a
37	CTCF	chr9:26613934-26614171	Fibrobl	skin:	n/a	n/a
38	CTCF	chr9:26614160-26614310	HVMF	connective:	n/a	n/a
39	RAD21	chr9:26613848-26614183	SK-N-SH_RA	brain:	n/a	n/a
40	RAD21	chr9:26613963-26614198	Hela-S3	cervix:	n/a	n/a
41	CTCF	chr9:26614140-26614290	GM12873	blood:	n/a	n/a
42	CTCF	chr9:26614120-26614270	HRPEpiC	eye:	n/a	n/a
43	CTCF	chr9:26613941-26614172	Gliobla	brain:	n/a	n/a
44	CTCF	chr9:26613924-26614163	K562	blood:	n/a	n/a
45	CTCF	chr9:26613959-26614202	K562	blood:	n/a	n/a
46	RAD21	chr9:26613734-26614281	SK-N-SH	brain:	n/a	n/a
47	CTCF	chr9:26614120-26614270	K562	blood:	n/a	n/a
48	CTCF	chr9:26614140-26614290	GM12865	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000266429	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892857	chr9:26593785-26633841	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv6508	chr9:26602437-26647117	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3390148	chr9:26614018-26614185	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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