Variant report

Variant	rs143531567
Chromosome Location	chr8:95476715-95476716
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95475669..95479666-chr8:95485305..95487401,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197275	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1835971	chr8:95467241-95490541	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3365381	chr8:95476592-95476764	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95432400-95478600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:95449400-95485200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:95449400-95486200	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:95449800-95479600	Weak transcription	NH-A	brain
5	chr8:95450000-95486000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:95450200-95480000	Weak transcription	NHEK	skin
7	chr8:95450400-95479800	Weak transcription	HMEC	breast
8	chr8:95450600-95478400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:95450600-95484800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:95454000-95485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:95454200-95485400	Weak transcription	Fetal Intestine Small	intestine
12	chr8:95455400-95485000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:95455600-95486200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:95460000-95485000	Weak transcription	HepG2	liver
15	chr8:95462000-95486400	Weak transcription	Primary B cells from cord blood	blood
16	chr8:95464400-95479800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:95464400-95485800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:95465200-95480600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:95467000-95477200	Weak transcription	K562	blood
20	chr8:95468000-95480400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:95468000-95485200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:95468400-95479800	Weak transcription	Primary T cells from cord blood	blood
23	chr8:95468600-95485800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:95468800-95477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:95468800-95478200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:95468800-95479800	Weak transcription	NHDF-Ad	bronchial
27	chr8:95468800-95484800	Weak transcription	Fetal Lung	lung
28	chr8:95469000-95485600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:95469000-95486000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr8:95469200-95479800	Weak transcription	Osteobl	bone
31	chr8:95470200-95479200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:95470400-95479800	Weak transcription	HSMM	muscle
33	chr8:95470600-95485800	Weak transcription	Fetal Thymus	thymus
34	chr8:95471000-95480600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:95471600-95480600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:95472200-95480800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:95472400-95486400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr8:95472800-95478800	Weak transcription	Fetal Stomach	stomach
39	chr8:95472800-95486600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:95473000-95480000	Strong transcription	A549	lung
41	chr8:95473400-95478200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:95473800-95480400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr8:95474800-95477800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr8:95474800-95486200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr8:95475200-95486800	Weak transcription	Gastric	stomach
46	chr8:95475600-95480600	Strong transcription	Dnd41	blood
47	chr8:95475800-95480200	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr8:95475800-95480200	Weak transcription	Fetal Intestine Large	intestine
49	chr8:95475800-95486800	Weak transcription	Aorta	Aorta
50	chr8:95476000-95480000	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links