Variant report

Variant	rs1435606
Chromosome Location	chr2:142742697-142742698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10184304	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10207821	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10221874	1.00[JPT][hapmap]
rs1036398	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10928132	1.00[JPT][hapmap]
rs1156052	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs13027755	1.00[JPT][hapmap]
rs1435605	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs17771092	1.00[JPT][hapmap]
rs1898020	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6429939	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6429940	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs6429942	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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