Variant report

Variant	rs143561945
Chromosome Location	chr10:49673710-49673711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49514372..49515875-chr10:49672720..49674716,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3376035	chr10:49673571-49676119	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
3	chr10:49665400-49675000	Weak transcription	HUVEC	blood vessel
4	chr10:49668200-49674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:49668400-49676200	Weak transcription	NHLF	lung
6	chr10:49668800-49674200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:49669000-49674000	Enhancers	K562	blood
8	chr10:49669200-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:49670200-49675200	Weak transcription	Osteobl	bone
10	chr10:49670800-49674200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr10:49670800-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:49671000-49680400	Enhancers	Primary hematopoietic stem cells	blood
13	chr10:49671200-49673800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:49671200-49674000	Enhancers	Fetal Heart	heart
15	chr10:49671200-49674400	Enhancers	Colon Smooth Muscle	Colon
16	chr10:49671200-49675400	Enhancers	Brain Hippocampus Middle	brain
17	chr10:49671400-49673800	Enhancers	Brain Cingulate Gyrus	brain
18	chr10:49671400-49673800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:49671400-49673800	Enhancers	Fetal Lung	lung
20	chr10:49671400-49674200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:49671400-49674200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:49671400-49674200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:49671400-49674800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:49671400-49675200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:49671400-49675600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:49671800-49674200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:49671800-49674400	Enhancers	Esophagus	oesophagus
28	chr10:49672200-49674200	Weak transcription	Right Atrium	heart
29	chr10:49672400-49674200	Bivalent Enhancer	Fetal Stomach	stomach
30	chr10:49672400-49675200	Bivalent Enhancer	Placenta	Placenta
31	chr10:49672400-49675400	Enhancers	Brain Substantia Nigra	brain
32	chr10:49672400-49677200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:49672400-49683400	Weak transcription	Spleen	Spleen
34	chr10:49672600-49673800	Enhancers	Fetal Brain Male	brain
35	chr10:49672600-49674200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:49672600-49674200	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr10:49672600-49674400	Enhancers	Left Ventricle	heart
38	chr10:49672600-49681800	Weak transcription	Aorta	Aorta
39	chr10:49672800-49674200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr10:49672800-49674600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:49672800-49675200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:49673000-49674000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
43	chr10:49673000-49681200	Weak transcription	HSMM	muscle
44	chr10:49673200-49673800	Enhancers	H1 Cell Line	embryonic stem cell
45	chr10:49673200-49673800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:49673200-49673800	Genic enhancers	Muscle Satellite Cultured Cells	--
47	chr10:49673200-49674200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:49673200-49674600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr10:49673200-49674600	Flanking Active TSS	NHEK	skin
50	chr10:49673400-49673800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links