Variant report

Variant	rs143575989
Chromosome Location	chr16:81840724-81840725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1067307	chr16:81832031-81851736	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv10620	chr16:81837672-81841805	Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv523908	chr16:81840122-81844691	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81818000-81845000	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr16:81819800-81848800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:81827800-81841800	Weak transcription	Fetal Intestine Small	intestine
4	chr16:81829200-81842400	Weak transcription	Pancreas	Pancrea
5	chr16:81830800-81842400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:81832400-81842400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr16:81832800-81840800	Weak transcription	Placenta	Placenta
8	chr16:81832800-81848600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr16:81833000-81841600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr16:81833200-81841400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr16:81833200-81842000	Genic enhancers	Primary B cells from cord blood	blood
12	chr16:81837400-81842000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
13	chr16:81838200-81842400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr16:81838400-81844000	Weak transcription	Gastric	stomach
15	chr16:81838600-81841400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:81838600-81851400	Weak transcription	Right Atrium	heart
17	chr16:81838800-81841800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr16:81839600-81842000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr16:81839800-81841200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr16:81839800-81841600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr16:81839800-81842800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr16:81840200-81841000	Genic enhancers	Spleen	Spleen
23	chr16:81840200-81841800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr16:81840200-81842600	Weak transcription	Lung	lung
25	chr16:81840600-81840800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr16:81840600-81841600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr16:81840600-81848800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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