Variant report

Variant	rs143638978
Chromosome Location	chr11:18091627-18091628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18079997..18081665-chr11:18090672..18092911,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553591	chr11:18090519-18100022	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18070800-18102600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:18081400-18100400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:18083200-18109000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:18083400-18102400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:18084800-18108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:18085200-18097000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:18085200-18104200	Weak transcription	Fetal Intestine Small	intestine
8	chr11:18085200-18113000	Weak transcription	Fetal Brain Male	brain
9	chr11:18085400-18093800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:18085600-18101000	Weak transcription	Thymus	Thymus
11	chr11:18085600-18102000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:18085800-18095600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:18085800-18095800	Weak transcription	Adipose Nuclei	Adipose
14	chr11:18085800-18100600	Weak transcription	Fetal Kidney	kidney
15	chr11:18085800-18109600	Weak transcription	Spleen	Spleen
16	chr11:18086000-18095800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:18086000-18100000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:18086000-18101000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:18086000-18105600	Weak transcription	Right Ventricle	heart
20	chr11:18086200-18100600	Weak transcription	Brain Anterior Caudate	brain
21	chr11:18086400-18107600	Weak transcription	Lung	lung
22	chr11:18086600-18100600	Weak transcription	Liver	Liver
23	chr11:18087400-18099800	Weak transcription	Dnd41	blood
24	chr11:18087400-18100600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:18087400-18109800	Weak transcription	Gastric	stomach
26	chr11:18087400-18115800	Weak transcription	Pancreas	Pancrea
27	chr11:18087600-18093800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:18087600-18099800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:18087600-18100400	Weak transcription	HMEC	breast
30	chr11:18087600-18102400	Weak transcription	Brain Germinal Matrix	brain
31	chr11:18087600-18105200	Weak transcription	NHEK	skin
32	chr11:18087800-18100400	Weak transcription	Fetal Brain Female	brain
33	chr11:18087800-18100800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:18088200-18100800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:18088600-18100400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:18088800-18101200	Weak transcription	Ovary	ovary
37	chr11:18089200-18092200	Weak transcription	Fetal Lung	lung
38	chr11:18089200-18099800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:18089200-18102400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:18089600-18100800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:18089600-18101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:18089600-18102600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:18089800-18095600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:18089800-18099800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:18089800-18100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:18090000-18100600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:18090200-18107600	Weak transcription	Aorta	Aorta
48	chr11:18090400-18100600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:18090600-18100800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:18090800-18100600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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