Variant report

Variant	rs143660587
Chromosome Location	chr6:167000253-167000254
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr6:167000139-167000802	HCT-116	colon:	n/a	n/a
2	NFE2	chr6:167000249-167000616	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:166999805-167000368	GM12878	blood:	n/a	n/a
4	SP1	chr6:167000199-167000646	GM12878	blood:	n/a	n/a
5	USF2	chr6:167000238-167000622	H1-hESC	embryonic stem cell:	n/a	chr6:167000428-167000439
6	YY1	chr6:167000217-167000616	ECC-1	luminal epithelium:	n/a	n/a
7	YY1	chr6:167000251-167000590	GM12878	blood:	n/a	n/a
8	USF1	chr6:167000166-167000747	ECC-1	luminal epithelium:	n/a	chr6:167000427-167000438
9	POLR2A	chr6:166999919-167000318	GM12891	blood:	n/a	n/a
10	ZNF143	chr6:167000197-167000619	K562	blood:	n/a	n/a
11	USF1	chr6:167000185-167000815	HCT-116	colon:	n/a	chr6:167000427-167000438
12	NFYB	chr6:167000237-167000868	Hela-S3	cervix:	n/a	chr6:167000440-167000455
13	USF1	chr6:167000211-167000597	GM12878	blood:	n/a	chr6:167000427-167000438
14	YY1	chr6:167000228-167000591	K562	blood:	n/a	n/a
15	POLR2A	chr6:166999936-167000337	SK-N-SH	brain:	n/a	n/a
16	SIX5	chr6:167000148-167000569	H1-hESC	embryonic stem cell:	n/a	n/a
17	SIX5	chr6:167000194-167000600	H1-hESC	embryonic stem cell:	n/a	n/a
18	SP1	chr6:167000039-167000839	HCT-116	colon:	n/a	n/a
19	USF1	chr6:167000043-167000566	A549	lung:	n/a	chr6:167000427-167000438
20	SPI1	chr6:167000026-167000257	GM12878	blood:	n/a	chr6:167000158-167000165
21	ZNF143	chr6:167000206-167000637	H1-hESC	embryonic stem cell:	n/a	n/a
22	SIX5	chr6:167000230-167000600	K562	blood:	n/a	n/a
23	SP1	chr6:167000174-167000668	A549	lung:	n/a	n/a
24	USF1	chr6:167000204-167000621	A549	lung:	n/a	chr6:167000427-167000438
25	YY1	chr6:167000235-167000606	GM12878	blood:	n/a	n/a
26	SIX5	chr6:167000150-167000616	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:166999906-167000371	PFSK-1	brain:	n/a	n/a
28	USF1	chr6:167000233-167000576	GM12878	blood:	n/a	chr6:167000427-167000438
29	YY1	chr6:167000202-167000562	K562	blood:	n/a	n/a
30	NFYB	chr6:167000208-167000908	K562	blood:	n/a	chr6:167000440-167000455
31	YY1	chr6:167000245-167000614	ECC-1	luminal epithelium:	n/a	n/a
32	USF1	chr6:166999975-167000562	A549	lung:	n/a	chr6:167000427-167000438
33	ETS1	chr6:167000226-167000616	K562	blood:	n/a	n/a
34	NFYA	chr6:167000253-167000615	K562	blood:	n/a	n/a
35	USF1	chr6:167000231-167000604	H1-hESC	embryonic stem cell:	n/a	chr6:167000427-167000438
36	HEY1	chr6:166999909-167000286	K562	blood:	n/a	n/a
37	HCFC1	chr6:167000211-167000730	K562	blood:	n/a	n/a
38	USF1	chr6:167000238-167000607	SK-N-SH_RA	brain:	n/a	chr6:167000427-167000438
39	NFYB	chr6:167000140-167000957	GM12878	blood:	n/a	chr6:167000440-167000455
40	USF1	chr6:167000129-167000848	HCT-116	colon:	n/a	chr6:167000427-167000438
41	YY1	chr6:167000211-167000583	GM12892	blood:	n/a	n/a
42	USF1	chr6:167000149-167000687	ECC-1	luminal epithelium:	n/a	chr6:167000427-167000438
43	HCFC1	chr6:167000253-167000710	Hela-S3	cervix:	n/a	n/a
44	SIX5	chr6:167000180-167000561	K562	blood:	n/a	n/a
45	SP1	chr6:167000133-167000674	A549	lung:	n/a	n/a
46	SIX5	chr6:167000131-167000609	GM12878	blood:	n/a	n/a
47	POLR2A	chr6:166999903-167000289	U87	brain:	n/a	n/a
48	POLR2A	chr6:166999863-167000345	GM12892	blood:	n/a	n/a
49	HEY1	chr6:166999884-167000289	K562	blood:	n/a	n/a
50	USF1	chr6:167000166-167000652	K562	blood:	n/a	chr6:167000427-167000438

Variant related genes	Relation type
FAM103A2P	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	esv3522272	chr6:166998312-167001210	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2580547	chr6:166998381-167000738	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3522269	chr6:166998589-167000640	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2182887	chr6:166998779-167000380	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3474374	chr6:166998856-167000273	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3522270	chr6:166998903-167000274	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166981800-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:166986200-167002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:166986600-167001400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:166986800-167003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:166987000-167002000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:166987200-167001800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:166989000-167011400	Weak transcription	Ovary	ovary
8	chr6:166989600-167001800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:166990600-167001800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:166992400-167000400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:166993600-167003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:166993800-167001800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:166994000-167003600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:166994800-167002000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:166995000-167008400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:166995600-167002400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:166995800-167000400	Weak transcription	Spleen	Spleen
18	chr6:166995800-167001200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:166995800-167001600	Weak transcription	Gastric	stomach
20	chr6:166995800-167002200	Weak transcription	Right Ventricle	heart
21	chr6:166996800-167000600	Weak transcription	Stomach Mucosa	stomach
22	chr6:166996800-167001400	Weak transcription	Brain Anterior Caudate	brain
23	chr6:166997000-167000400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:166997000-167000600	Weak transcription	Fetal Kidney	kidney
25	chr6:166997000-167002200	Weak transcription	Pancreas	Pancrea
26	chr6:166997000-167003000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:166997200-167002000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:166997200-167002200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:166997200-167003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:166997200-167006000	Weak transcription	Aorta	Aorta
31	chr6:166997400-167003000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:166997600-167002200	Weak transcription	HMEC	breast
33	chr6:166997800-167000400	Weak transcription	Primary B cells from cord blood	blood
34	chr6:166997800-167001200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:166997800-167001600	Weak transcription	Lung	lung
36	chr6:166998000-167000400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:166998000-167000400	Weak transcription	Fetal Intestine Small	intestine
38	chr6:166998000-167000600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:166998000-167000800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:166998000-167011200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:166998200-167002200	Weak transcription	Left Ventricle	heart
42	chr6:166998600-167000400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:166998600-167001400	Weak transcription	Fetal Stomach	stomach
44	chr6:166998600-167002400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:166998800-167000400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:166998800-167000400	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:166998800-167000600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr6:166998800-167000600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:166998800-167001200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:166998800-167001200	Weak transcription	NH-A	brain

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