Variant report

Variant	rs143664361
Chromosome Location	chr7:5607786-5607787
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr7:5607451-5607861	K562	blood:	n/a	n/a
2	RFX5	chr7:5607559-5607798	HepG2	liver:	n/a	n/a
3	EP300	chr7:5607538-5607794	K562	blood:	n/a	n/a
4	RUNX3	chr7:5607429-5607811	GM12878	blood:	n/a	n/a
5	TEAD4	chr7:5607354-5607790	K562	blood:	n/a	n/a
6	SRF	chr7:5607460-5607875	ECC-1	luminal epithelium:	n/a	n/a
7	NR2C2	chr7:5607452-5607839	Hela-S3	cervix:	n/a	n/a
8	CBX3	chr7:5607364-5607872	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:5594823..5597043-chr7:5604963..5607865,2	MCF-7	breast:
2	chr7:5601903..5606389-chr7:5607716..5610535,5	MCF-7	breast:
3	chr7:5607347..5609764-chr7:5625302..5626880,2	MCF-7	breast:
4	chr7:5600360..5604967-chr7:5605162..5611387,11	MCF-7	breast:
5	chr7:5607571..5611303-chr7:5630699..5633841,5	MCF-7	breast:
6	chr7:5569812..5572018-chr7:5607742..5609745,2	MCF-7	breast:

No data

Variant related genes	Relation type
ACTB	TF binding region
ENSG00000228974	Chromatin interaction
ENSG00000272719	Chromatin interaction
ENSG00000075624	Chromatin interaction
ENSG00000075618	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	esv1814049	chr7:5314993-5675131	Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	333 gene(s)	inside rSNPs	diseases
5	esv1820266	chr7:5332088-5665173	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
6	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
7	nsv887404	chr7:5402606-5667645	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
8	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
9	nsv887408	chr7:5432672-5667645	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
10	nsv830890	chr7:5464933-5705158	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
12	nsv887413	chr7:5521468-5607884	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	279 gene(s)	inside rSNPs	diseases
13	nsv1025434	chr7:5537571-5705283	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
14	nsv482449	chr7:5557585-5743673	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
15	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
16	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
17	nsv887414	chr7:5584934-5667645	Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
18	nsv887415	chr7:5584934-5675305	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
19	nsv887416	chr7:5584934-5695259	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
20	esv13701	chr7:5607355-5611372	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5603200-5609000	Weak transcription	Fetal Heart	heart
2	chr7:5603400-5608600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:5603400-5608600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:5603400-5608800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:5603400-5608800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:5603400-5608800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:5603400-5608800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:5603400-5608800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:5603400-5608800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:5603400-5608800	Weak transcription	HMEC	breast
11	chr7:5603400-5609000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:5603400-5609000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:5603400-5609000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:5603400-5609000	Weak transcription	Liver	Liver
15	chr7:5603400-5609000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:5603400-5609000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:5603400-5609000	Weak transcription	Left Ventricle	heart
18	chr7:5603400-5609000	Weak transcription	Ovary	ovary
19	chr7:5603400-5609000	Weak transcription	Psoas Muscle	Psoas
20	chr7:5603400-5609000	Weak transcription	Right Atrium	heart
21	chr7:5603400-5609000	Weak transcription	Spleen	Spleen
22	chr7:5603400-5609000	Weak transcription	HSMMtube	muscle
23	chr7:5603400-5609000	Weak transcription	NH-A	brain
24	chr7:5603400-5609000	Weak transcription	NHDF-Ad	bronchial
25	chr7:5603400-5609000	Weak transcription	NHLF	lung
26	chr7:5603600-5608600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:5603600-5608600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:5603600-5608800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:5603600-5608800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:5603600-5608800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:5603600-5608800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:5603600-5608800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:5603600-5608800	Weak transcription	Adipose Nuclei	Adipose
34	chr7:5603600-5608800	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:5603600-5608800	Weak transcription	Fetal Brain Male	brain
36	chr7:5603600-5608800	Weak transcription	Fetal Stomach	stomach
37	chr7:5603600-5608800	Weak transcription	Hela-S3	cervix
38	chr7:5603600-5608800	Weak transcription	HUVEC	blood vessel
39	chr7:5603600-5608800	Weak transcription	NHEK	skin
40	chr7:5603600-5609000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:5603600-5609000	Weak transcription	Primary B cells from cord blood	blood
42	chr7:5603600-5609000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr7:5603600-5609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:5603600-5609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:5603600-5609000	Weak transcription	Brain Germinal Matrix	brain
46	chr7:5603600-5609000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:5603600-5609000	Weak transcription	Colonic Mucosa	Colon
48	chr7:5603600-5609000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:5603600-5609400	Weak transcription	Stomach Mucosa	stomach
50	chr7:5603800-5608600	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links