Variant report

Variant	rs143672634
Chromosome Location	chr6:24526262-24526263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24526174..24528184-chr6:24717834..24720717,3	K562	blood:
2	chr6:24523688..24526663-chr6:24667463..24669411,2	K562	blood:

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3419749	chr6:24525998-24528546	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496000-24534200	Weak transcription	Gastric	stomach
2	chr6:24496000-24538000	Weak transcription	Esophagus	oesophagus
3	chr6:24496200-24526400	Weak transcription	Right Atrium	heart
4	chr6:24496200-24527800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:24496200-24534200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:24496200-24535000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:24496200-24536200	Weak transcription	Psoas Muscle	Psoas
8	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
9	chr6:24496400-24532200	Weak transcription	Brain Germinal Matrix	brain
10	chr6:24496800-24532400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:24497000-24528200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:24504400-24534200	Weak transcription	Pancreas	Pancrea
13	chr6:24505400-24534000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:24505800-24527800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:24505800-24530800	Weak transcription	Right Ventricle	heart
16	chr6:24505800-24534000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:24505800-24534000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:24506400-24530000	Weak transcription	Placenta	Placenta
19	chr6:24507400-24531400	Weak transcription	Fetal Lung	lung
20	chr6:24507600-24532400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:24507600-24532400	Weak transcription	Fetal Brain Female	brain
22	chr6:24507800-24532400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:24507800-24536800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:24507800-24539200	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
26	chr6:24512400-24533000	Weak transcription	Brain Substantia Nigra	brain
27	chr6:24515000-24532200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:24516000-24530800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:24516000-24531000	Weak transcription	Brain Anterior Caudate	brain
30	chr6:24516000-24534200	Weak transcription	Brain Angular Gyrus	brain
31	chr6:24516200-24527800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:24516200-24532400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:24517400-24532600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:24517600-24532200	Weak transcription	Left Ventricle	heart
35	chr6:24518200-24527400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr6:24518200-24530800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:24518600-24531600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr6:24518800-24533000	Weak transcription	Spleen	Spleen
39	chr6:24519000-24532200	Weak transcription	Ovary	ovary
40	chr6:24519200-24527800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:24519200-24531800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:24519400-24530800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:24521400-24532800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:24522400-24526600	Strong transcription	Liver	Liver
45	chr6:24523000-24533000	Weak transcription	Fetal Kidney	kidney
46	chr6:24523000-24534200	Weak transcription	Lung	lung
47	chr6:24523000-24537000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:24523200-24532400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:24523200-24532600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:24523200-24534200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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