Variant report

Variant	rs143672882
Chromosome Location	chr1:224861088-224861089
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224859647..224863135-chr1:224864370..224868600,5	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv21093	chr1:224860202-224861277	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv549261	chr1:224860520-224861202	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:224832800-224869000	Weak transcription	Dnd41	blood
3	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:224851400-224863000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:224857000-224862600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:224857200-224869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:224857200-224869200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:224858400-224871800	Weak transcription	NHLF	lung
9	chr1:224858400-224874200	Weak transcription	NH-A	brain
10	chr1:224858600-224861800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:224859600-224871400	Weak transcription	NHDF-Ad	bronchial
12	chr1:224860200-224861800	Enhancers	Fetal Brain Male	brain
13	chr1:224860600-224861200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:224860600-224861800	Enhancers	Fetal Heart	heart
15	chr1:224860600-224861800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:224860800-224861200	Enhancers	Fetal Lung	lung
17	chr1:224860800-224861200	Enhancers	Lung	lung
18	chr1:224860800-224861200	Enhancers	Ovary	ovary
19	chr1:224860800-224861400	Enhancers	Fetal Brain Female	brain
20	chr1:224860800-224861400	Enhancers	Fetal Stomach	stomach
21	chr1:224860800-224862400	Enhancers	Fetal Muscle Leg	muscle
22	chr1:224860800-224862400	Enhancers	Left Ventricle	heart
23	chr1:224860800-224862400	Enhancers	Right Atrium	heart
24	chr1:224861000-224861200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:224861000-224861400	Enhancers	Adipose Nuclei	Adipose
26	chr1:224861000-224861600	Weak transcription	Pancreas	Pancrea
27	chr1:224861000-224861600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr1:224861000-224863600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links