Variant report

Variant	rs143732900
Chromosome Location	chr18:44527324-44527325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44526928..44528966-chr18:44543505..44545090,2	MCF-7	breast:
2	chr18:44494535..44496872-chr18:44526864..44529810,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266996	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv833639	chr18:44426363-44552719	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv576813	chr18:44481641-44531283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1057629	chr18:44500259-44539223	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1062444	chr18:44503472-44539223	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1062682	chr18:44509052-44539223	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1056744	chr18:44509052-44581752	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv909609	chr18:44513071-44597092	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv1818108	chr18:44519357-44549177	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1825684	chr18:44526351-44549177	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44526000-44527600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr18:44526200-44527400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:44526200-44527400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr18:44526200-44527400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:44526200-44527400	Active TSS	Muscle Satellite Cultured Cells	--
6	chr18:44526200-44527400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:44526200-44527400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr18:44526200-44527400	Active TSS	Brain Angular Gyrus	brain
9	chr18:44526200-44527400	Active TSS	Brain Cingulate Gyrus	brain
10	chr18:44526200-44527400	Active TSS	Brain Hippocampus Middle	brain
11	chr18:44526200-44527400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr18:44526200-44527400	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr18:44526200-44527400	Active TSS	Rectal Smooth Muscle	rectum
14	chr18:44526200-44527600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr18:44526200-44527600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:44526200-44527600	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr18:44526200-44527600	Active TSS	Fetal Kidney	kidney
18	chr18:44526200-44527600	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr18:44526400-44527400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr18:44526400-44527400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr18:44526400-44527400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr18:44526400-44527400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr18:44526400-44527400	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr18:44526400-44527400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr18:44526400-44527400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr18:44526400-44527400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr18:44526400-44527400	Active TSS	Brain Substantia Nigra	brain
28	chr18:44526400-44527400	Active TSS	Fetal Lung	lung
29	chr18:44526400-44527400	Active TSS	Fetal Stomach	stomach
30	chr18:44526400-44527400	Active TSS	Ovary	ovary
31	chr18:44526400-44527400	Active TSS	Psoas Muscle	Psoas
32	chr18:44526400-44527400	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr18:44526400-44527400	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr18:44526400-44527400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
35	chr18:44526400-44527400	Active TSS	HMEC	breast
36	chr18:44526400-44527400	Active TSS	HSMM	muscle
37	chr18:44526400-44527600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr18:44526400-44527600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr18:44526400-44527600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
40	chr18:44526400-44527600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr18:44526400-44527600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr18:44526400-44527600	Active TSS	NHEK	skin
43	chr18:44526600-44527400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr18:44526600-44527400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr18:44526600-44527400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
46	chr18:44526600-44527400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr18:44526600-44527400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr18:44526600-44527400	Active TSS	Colonic Mucosa	Colon
49	chr18:44526600-44527400	Active TSS	Fetal Brain Male	brain
50	chr18:44526600-44527400	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links