Variant report

Variant	rs143772562
Chromosome Location	chr2:55171574-55171575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55164941..55167851-chr2:55169428..55172697,4	K562	blood:
2	chr2:55171297..55173305-chr2:55180645..55183398,2	K562	blood:

Variant related genes	Relation type
ENSG00000214595	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv582029	chr2:55159043-55204498	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv3393792	chr2:55171448-55173496	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55166200-55172800	Weak transcription	Gastric	stomach
2	chr2:55168600-55172600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:55168800-55193400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr2:55169000-55172400	Weak transcription	HepG2	liver
5	chr2:55169000-55172600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:55169000-55172600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:55169000-55172600	Weak transcription	Pancreas	Pancrea
8	chr2:55169000-55172800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:55169200-55172200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:55169200-55172400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:55169200-55172400	Weak transcription	HMEC	breast
12	chr2:55169600-55172600	Weak transcription	Brain Substantia Nigra	brain
13	chr2:55169800-55171600	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:55169800-55172600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:55169800-55172600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:55169800-55172800	Weak transcription	Esophagus	oesophagus
17	chr2:55170000-55171800	Weak transcription	Brain Angular Gyrus	brain
18	chr2:55170000-55172400	Weak transcription	HSMM	muscle
19	chr2:55170000-55172800	Weak transcription	Lung	lung
20	chr2:55170200-55171800	Enhancers	Dnd41	blood
21	chr2:55170400-55171800	Weak transcription	Brain Anterior Caudate	brain
22	chr2:55170400-55172400	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:55170400-55190400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:55170600-55172800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr2:55170800-55172600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr2:55171200-55171600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:55171400-55172600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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