Variant report

Variant	rs143779350
Chromosome Location	chr1:94479613-94479614
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94474811..94477803-chr1:94479025..94480714,3	K562	blood:
2	chr1:94478608..94480498-chr1:94484594..94486437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198691	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv546850	chr1:94479468-94485277	Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94471200-94480600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94475400-94485600	Weak transcription	NH-A	brain
3	chr1:94476400-94480000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:94476800-94480400	Enhancers	Fetal Intestine Large	intestine
5	chr1:94477000-94479800	Enhancers	Fetal Intestine Small	intestine
6	chr1:94477000-94481600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:94477200-94480400	Weak transcription	HMEC	breast
8	chr1:94477400-94479800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr1:94477400-94480000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:94477400-94480200	Enhancers	Brain Germinal Matrix	brain
11	chr1:94477800-94479800	Weak transcription	Spleen	Spleen
12	chr1:94478000-94479800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr1:94478400-94480000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr1:94478400-94480400	Weak transcription	Osteobl	bone
15	chr1:94478600-94480000	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr1:94479000-94480200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:94479000-94481600	Enhancers	K562	blood
18	chr1:94479200-94480200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:94479200-94484800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:94479400-94484800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:94479400-94484800	Weak transcription	Placenta	Placenta
22	chr1:94479400-94486000	Weak transcription	HSMM	muscle
23	chr1:94479600-94486200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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