Variant report

Variant	rs143788146
Chromosome Location	chr6:79522942-79522943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHIP-1	chr6:79522839-79523020	XLOC_005771

Extended variants
information (count: 83 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:83 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433815	chr6:79443282-79536957	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	esv1795323	chr6:79483130-79526269	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv1795891	chr6:79483130-79526269	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv1799614	chr6:79483130-79526269	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv1799452	chr6:79483130-79536282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv5366	chr6:79497125-79537571	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv508416	chr6:79510199-79538206	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3474614	chr6:79519133-79525131	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv3474615	chr6:79519133-79525131	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv1794724	chr6:79519669-79526269	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv970720	chr6:79519769-79535695	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv604012	chr6:79519842-79524841	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv604013	chr6:79519842-79524866	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
14	nsv604014	chr6:79519842-79525264	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
15	nsv604015	chr6:79519842-79525971	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	esv1799898	chr6:79519842-79526269	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	nsv604016	chr6:79519842-79526269	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	esv3518854	chr6:79520233-79531031	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv3515549	chr6:79520383-79529881	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv3515550	chr6:79520383-79529881	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv3474127	chr6:79520731-79530971	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
22	esv2565425	chr6:79520768-79531660	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
23	esv2494469	chr6:79520898-79531809	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
24	esv2224222	chr6:79520905-79530797	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
25	esv3518852	chr6:79520907-79530855	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
26	esv3474131	chr6:79520940-79530810	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
27	esv3518856	chr6:79520972-79530794	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
28	nsv823756	chr6:79520975-79524760	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
29	nsv823757	chr6:79520975-79531657	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
30	esv3518855	chr6:79520979-79530786	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
31	esv3474128	chr6:79520995-79530762	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
32	nsv819795	chr6:79521005-79528507	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
33	nsv442992	chr6:79521062-79528574	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
34	nsv514377	chr6:79521065-79524617	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
35	esv1793214	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
36	esv1796079	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
37	esv1796251	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
38	esv1797473	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
39	esv1798442	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
40	esv1802073	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
41	esv1834280	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
42	esv1834879	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
43	esv1836965	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
44	esv1836986	chr6:79521067-79526269	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
45	esv1837190	chr6:79521067-79526269	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
46	esv1840719	chr6:79521067-79526269	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
47	esv1840956	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
48	esv1841555	chr6:79521067-79526269	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
49	esv3474130	chr6:79521070-79530690	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
50	esv3474132	chr6:79521084-79530690	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79521800-79527000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:79522800-79523000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:79522800-79523000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links