Variant report

Variant	rs143804642
Chromosome Location	chr4:150998218-150998219
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:150998171-150998371	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
DCLK2	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3325727	chr4:150998027-151001275	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150989800-150998400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:150994000-150999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:150994400-150998800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:150994600-150998800	Weak transcription	HSMM	muscle
5	chr4:150994800-150998600	Weak transcription	Brain Angular Gyrus	brain
6	chr4:150994800-150998800	Weak transcription	Adipose Nuclei	Adipose
7	chr4:150994800-150998800	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:150995000-150998400	Weak transcription	Brain Anterior Caudate	brain
9	chr4:150995000-150998600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:150995000-150998800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:150995000-150998800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:150995000-150998800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:150995000-150998800	Weak transcription	HSMMtube	muscle
14	chr4:150995000-150998800	Weak transcription	NH-A	brain
15	chr4:150995000-150998800	Weak transcription	NHDF-Ad	bronchial
16	chr4:150995000-150998800	Weak transcription	NHLF	lung
17	chr4:150995200-150998800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:150995400-150998800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:150995400-150998800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:150995400-150998800	Weak transcription	Osteobl	bone
21	chr4:150997000-150998600	Enhancers	A549	lung
22	chr4:150997600-150998400	Enhancers	Brain Germinal Matrix	brain
23	chr4:150998200-150998400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:150998200-150998400	Enhancers	Brain Cingulate Gyrus	brain
25	chr4:150998200-150998400	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr4:150998200-150998600	Enhancers	Fetal Brain Male	brain
27	chr4:150998200-150998600	Enhancers	Fetal Brain Female	brain
28	chr4:150998200-150998600	Enhancers	Stomach Smooth Muscle	stomach
29	chr4:150998200-150998800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links