Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11684634	0.80[YRI][hapmap]
rs12990471	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13017254	1.00[ASN][1000 genomes]
rs13032794	1.00[CHB][hapmap]
rs1344916	0.80[AFR][1000 genomes]
rs1344925	0.80[YRI][hapmap]
rs1370656	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1438048	0.80[YRI][hapmap];0.80[AFR][1000 genomes]
rs1561320	0.81[YRI][hapmap]
rs17400121	1.00[CHB][hapmap]
rs17400834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866208	0.80[YRI][hapmap]
rs1866209	0.83[YRI][hapmap]
rs1986843	1.00[CHB][hapmap]
rs34543540	1.00[ASN][1000 genomes]
rs4893839	0.80[YRI][hapmap]
rs4893840	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs6756240	0.84[YRI][hapmap]
rs749207	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs998059	0.80[YRI][hapmap];0.80[AFR][1000 genomes]
rs998060	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178603400-178616000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178606000-178617800	Weak transcription	Ovary	ovary
3	chr2:178607400-178614800	Weak transcription	Fetal Lung	lung
4	chr2:178609200-178612800	Enhancers	HUVEC	blood vessel
5	chr2:178609400-178614000	Weak transcription	Fetal Kidney	kidney
6	chr2:178610200-178612800	Enhancers	Fetal Muscle Leg	muscle
7	chr2:178610600-178618400	Weak transcription	Right Atrium	heart
8	chr2:178610600-178618400	Weak transcription	Right Ventricle	heart
9	chr2:178610600-178628200	Weak transcription	Pancreas	Pancrea
10	chr2:178610800-178618400	Weak transcription	Left Ventricle	heart
11	chr2:178610800-178618800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:178612000-178613200	Enhancers	K562	blood
13	chr2:178612400-178615200	Weak transcription	Spleen	Spleen
14	chr2:178612600-178612800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr2:178612600-178615800	Weak transcription	Psoas Muscle	Psoas
16	chr2:178612600-178618200	Weak transcription	Adipose Nuclei	Adipose

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